Pseudomonas synxantha LBUM223: VO64_0430
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Entry
VO64_0430 CDS
T03769
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfb
Pseudomonas synxantha LBUM223
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfb03032
]
VO64_0430
03400 DNA repair and recombination proteins [BR:
pfb03400
]
VO64_0430
Enzymes [BR:
pfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VO64_0430
DNA replication proteins [BR:
pfb03032
]
Prokaryotic type
DNA Topoisomerases
VO64_0430
DNA repair and recombination proteins [BR:
pfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VO64_0430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AKA80976
UniProt:
A0AAU8TGN7
LinkDB
All DBs
Position
481327..482376
Genome browser
AA seq
349 aa
AA seq
DB search
MPDSSLPADLPRDLHYVDDTQPGIRRKKVRGKFQYLDAKGERITDADEIKRLNALAVPPA
YTDVWICADPRGHLQATGRDARGRKQYRYHPRWREVRDSDKYSRLQAFGNALPKLRKQLE
AQIAEPGFTREKVLATVVMLLDATLIRVGNTQYARENKSYGLTTLRNRHVDIKGNEIQFQ
FRGKSGVEHQVSVKDRRLASVVKRCMELPGQNLFQYLDEDGERHTVSSHDVNAYLHELTG
EDFTAKDYRTWAGTAMALAVLRELAWQPESDAKRHVVAMVKDVARQLGNTPAVCRKCYIH
PAVLEHFSLGELSKLPKPRVRKGLKAEEVALAMFLEKLAEDLPHKAKVG
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgcctgattcttcgttgcccgccgacctgccccgcgacctgcattacgttgacgacacc
cagcctggcattcgccgcaaaaaggtgaggggcaagttccagtacctggacgccaaaggc
gagcgcatcaccgatgccgatgaaatcaaacgcctgaacgccctggccgtgccgcccgcc
tacaccgatgtgtggatctgcgccgaccctcgcggccacctgcaggccactggccgcgat
gcccgtggccgcaagcaataccgctaccacccacgctggcgcgaagtgcgtgacagcgac
aagtactcgcgcttgcaggccttcggcaacgccttgccgaaattgcgcaaacagctggaa
gcacagatcgccgagccggggtttacccgcgaaaaggtcctggcgacggtggtgatgttg
ctcgatgccacgctgattcgcgtcggcaatacacagtacgcccgcgagaacaaatcctac
ggtctgactaccctgcgcaaccgccatgtggatatcaagggcaacgagatccagtttcag
tttcgtggcaagagcggtgtcgagcaccaggtcagcgtcaaggaccggcgcctggccagt
gtggtcaagcgctgtatggagttgcccgggcagaacctgttccagtacctggacgaagac
ggtgaacgccataccgtcagttcccacgacgtcaacgcctacctgcatgaactgaccggc
gaagactttaccgccaaggactatcgcacctgggccggcacggccatggcgttggcggta
ttacgcgagttggcgtggcagccggagtccgacgccaaacggcatgtggtggcgatggtc
aaggacgttgccaggcagttgggcaacacgcctgcggtgtgccgcaaatgttacatccac
cctgcggtgcttgagcatttcagcctcggtgaattgtcgaagctgcctaagccccgggtg
cgcaagggcctgaaagccgaggaagtggcgctggcgatgttccttgagaaactggccgag
gacttgccgcacaaagccaaggtgggttag
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