Pseudomonas synxantha LBUM223: VO64_0625
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Entry
VO64_0625 CDS
T03769
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pfb
Pseudomonas synxantha LBUM223
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfb03400
]
VO64_0625
DNA repair and recombination proteins [BR:
pfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VO64_0625
Archaeal homologous recombinant proteins
VO64_0625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
Snapin_Pallidin
nSTAND3
AAA_15
RsgA_GTPase
AAA_22
RadC
Motif
Other DBs
NCBI-ProteinID:
AKA81171
LinkDB
All DBs
Position
713882..717520
Genome browser
AA seq
1212 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR
LGDTGQAKMPDADTDISIGDPRTLIRRGTGGGYAEVDFVGVSGRRYRARWEANRARDKAS
GKLQNSRQSLIDLDSEQLLASQKTEYKTQLELALGLNFEQFTRAVLLAQSEFSAFLKAND
NERSELLEKLTDTALYTQLGRRAFDKAKDAKDAHKQLQDQATGVVPLAAEARAELDQQLA
DAQQQLKTRQAQLKQLELQHTWLKELREWQERQLSAVEQLQQAQQHWDSQGRQRQDLGRL
DQLAPQRHHFLRQAELDTLLTPLAAQIQQHIDQQAALHVRQEQSQQQQVAAHAALADALK
NQTDAAPLLRQAVEEQNTLAHLTRELAKRTEEKQQLSNACTEGQALLDGLQDKQAQVAER
LQRLATELEHSAALAPLSEAWNAYRDRLQQLMLVGNRLNKGQTELPQLEQRANAAAVQFT
QQREALELLYQEAGAEPHAVAEQIQLLAGLLQDNRKQQRAFEDLARLWDSQQQLDQQAAT
LTQKLTDAAQRREQLNQAGLQTKAELSVAEQALSVTKQLLERQRLARSASVEELRGQLQD
DQPCPVCGSHEHPFHQPEALLQSLGRHDENEEATAQKAVDSLKEKLTELRGEVGGLIAEQ
KEFLRQQEQLATQQQGLALSLQAHSLSASLFNQDVAQRSTWLVQQLAQLTQSISQDEQRQ
SALLNLQQNAGRLQQQLQAAQDASQQARQLLLDQQRELANDRERLDAELNAFAGLLPADT
LEGLRNDPATTFMRLDQQVSQRLEQLGHQRDELAEQQERQQAIEKQQTHQQHRQQQLDAL
NLQVNELAAQQQVIQEKLSALLGEHPSAEHWQQQLEQSVEQSRQAENDANQQLHSVHTAL
VQVAADLKALQERQQALQAEQHNLATRVSEWRALHPELDDDGLTRLLAFDEAQVAQLRQQ
LHNSEKAVEQAKVLLQEREQRLAEHQALHNGNLDSAQLDSNLAMLNQQLADGEKHCAELR
ARQSEDQRRQDANQALTEQITKAYEEWQRWARLNALIGSATGDTFRKIAQAYNLDLLVHH
ANVQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASMA
SSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQVK
RQGNGLSTLEVK
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaagatccttgccatccgcctgaaaaaccttgcatccctggccggcccgttcgaaatc
gactttaccgccgagcccctggccagtgcgggcctgttcgccatcaccgggccgaccggt
gccggtaaaagtaccctgctcgatgcattgtgcctggcgctgtttggcgcggtgccgcgc
ctgggcgataccggccaggcgaagatgccggatgccgacaccgatatctccatcggtgac
ccgcgcaccctgattcgccgcggtaccggtggtggctacgccgaggtggatttcgtcggc
gtcagcggccgtcgctatcgcgcgcgctgggaagccaaccgtgcccgcgacaaggccagc
ggcaaattgcagaacagccgccaaagcctgatcgacctggacagcgagcaactgctggcc
agtcagaaaaccgaatacaagacccagctggaactggccctgggcctgaacttcgagcag
ttcacccgtgcggtattgctggcgcaaagcgagttcagcgcctttctcaaggccaatgac
aatgagcgcagcgaactgctggaaaagctcaccgacaccgcgctgtacacccaacttggc
cgccgtgccttcgacaaggccaaggacgccaaggacgcccacaaacaactgcaagaccaa
gcaacaggcgtagtgcccctggccgccgaagcccgcgccgagctggatcaacagctggcc
gacgcccagcaacagctcaagacccggcaagcccagctcaagcaactggagttgcagcac
acctggctcaaggagctgcgtgaatggcaagagcgccagctcagcgccgtcgaacagctg
cagcaagcccagcaacactgggacagccaaggccggcaacgccaggacctgggtcgcctc
gaccagctggcgccacaacgccatcacttcttgcgccaggcagaactagacaccttgctg
acgccactggccgcgcagattcagcaacacatcgatcagcaagccgcactgcacgtccgc
caggaacagtcccaacaacagcaagtagccgcccacgcggcattggccgacgcgctgaaa
aaccagaccgacgccgcgcccttgctgcgccaggccgtggaagaacaaaacaccctcgcc
cacttgaccagggaactggccaagcgcaccgaggaaaaacagcagctctcaaacgcctgc
actgaaggccaggccctgctcgatggtttgcaagacaagcaggcccaagtcgccgagcgc
ctgcagcgcctggccaccgagcttgagcacagcgccgccctcgcccccttgagcgaggcc
tggaacgcctaccgcgaccgcctgcaacagctgatgttggtcggcaatcgtctcaacaaa
gggcagacagaactgccgcagctagaacagcgtgccaacgccgccgccgtgcagttcacc
caacagcgtgaagccctggagctgctctaccaggaagccggtgccgaaccccacgccgta
gccgaacagatccagctgctggccggcctgctgcaagacaatcgcaagcaacagcgcgcc
ttcgaagacctggcacgcttgtgggacagccagcaacagctggatcaacaggctgccacg
ctgacgcagaaactgaccgacgctgcgcaaagacgtgagcagctgaaccaggctggcctg
caaaccaaggccgaactcagtgttgccgagcaagccttgtcggtgaccaaacaactgttg
gagcgccaacgcctggcccgcagtgccagcgtcgaggaactacgcgggcagttgcaggat
gaccaaccctgcccggtatgcggcagtcacgagcatccgtttcaccaacccgaagccctg
ctgcaaagtctcggtcgccacgatgaaaacgaagaagccacggcacagaaagccgtcgac
agcctcaaggaaaaactcaccgagttgcgcggtgaggtcggcggcctgatcgccgaacaa
aaggaattcctgcgccaacaggaacagctggctacacagcaacagggcctggcactaagt
ctgcaagcccattcgctgtccgcttcgctgttcaatcaggacgtcgcccaacgcagcacc
tggctggtccaacaattggcacagctgacccaaagcatcagccaggacgaacagcgccaa
agcgccctgctcaacctgcaacaaaatgccggtcgcttgcagcaacaactgcaagcggcc
caggacgccagccagcaagcccggcaattgctgctggaccagcagcgcgaactggccaac
gaccgcgaacgcctcgacgcagaactcaacgccttcgccggcctgttgcccgccgacacc
ctggaaggcttgcgcaacgaccccgcgacgaccttcatgcgcctcgaccaacaggtcagc
caacgcctggaacagttgggccatcaacgtgatgaactggccgagcagcaagagcgccaa
caagccatcgagaaacaacagacccaccagcaacaccgccagcagcagctcgacgccctg
aatctgcaagtcaacgagttggcggcgcagcaacaggtgatccaggaaaaactcagcgcc
ttgttgggtgagcatcccagcgccgaacactggcagcaacagctggagcaaagcgtcgag
cagtcacgccaggccgagaacgacgccaaccagcaactgcatagcgtgcacacggccctg
gtgcaggtggcggcggacctcaaggccctgcaggaacgccagcaagcactgcaagctgag
caacacaacctggccacacgcgtctccgagtggcgcgccctgcaccctgaactggatgac
gacggcctgacacgcttgctggccttcgatgaagcccaggtcgcgcaactgcgccagcag
ttgcacaacagcgaaaaagccgtcgagcaggccaaggtattgctgcaagagcgtgaacaa
cgcctggccgaacaccaggcattgcacaacggcaacttggactccgcgcaattggacagc
aacctggcgatgctgaatcagcaactggccgacggcgagaaacactgcgcggaactgcgc
gcacgtcaatctgaagaccagcgccgccaggacgccaaccaggccctcaccgaacagatc
accaaggcttacgaagagtggcaacgctgggcgcgcctgaatgcgctgatcggctcggcc
accggcgacaccttccgcaagatcgcccaggcctataacctcgatttgctggtgcaccac
gccaacgtacaactgcgtcaactggtgcgccgctaccggcttaaacgcggtggcagcatg
ctcggcctgctggtgatggacaccgagatgggcgacgaactgcgctcggtgcactcgctg
tcgggtggcgaaaccttcctggtgtcgttggcgctggccctgggcctggcgtccatggcg
tcgagtaccttgaagatcgaatcgctgtttattgacgaaggtttcggcagcctcgacccc
gagtcgctgcaattggccatggacgccctggacggcctgcaggcccagggacgcaaggtg
gcggtgatctcccacgtgcaggaaatgcacgaacgcatcccggtgcagatccaggtcaag
cgccagggtaatggcttgagtactttggaggtcaagtga
DBGET
integrated database retrieval system
