Pseudomonas synxantha LBUM223: VO64_2054
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Entry
VO64_2054 CDS
T03769
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VO64_2054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfb03400
]
VO64_2054
Enzymes [BR:
pfb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VO64_2054
DNA repair and recombination proteins [BR:
pfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VO64_2054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_12
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AKA82600
UniProt:
A0AAU8TUU6
LinkDB
All DBs
Position
complement(2288209..2291880)
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AA seq
1223 aa
AA seq
DB search
MIGKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESGFGRELLPPQILVV
TFTDAATKELRERIRIRLAEAARFFRDEIEQPDALIADLRDQYPPEQWPACANRLDIAAQ
WMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDA
LSWVRSHWGGPAALMPRVRALFGSERPTDESREPAELINACLQERRAALVSLKAPWQQWA
VELRDICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADEALEQLDIGTGFTRLTPDGMA
EAWKGEPPQHPGIEAMAGLKASLDALPTPDAAVLQHAAGWVGKRFEEEKRRRAEMGFDDM
LIRLNAALQADGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFL
IGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAEAGRGA
FLFREPNGENPVPFHPVLSQGRREHLQVDGQTLPAMNLWHLPTDQPISNALYRQQLAAAC
ATQIVALLNGGQQGTAGFVTKDSFTGVLPSNIAILVRDGKEAQAVRAELASRGVRSVYLS
DKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDELAWESRV
MQFRGYRSIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASELD
GEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKP
VDGSRLPLHYHDEQGKSQVSLRPTAELIAQADDERLAEDLRLFYVALTRAKHACWLGIAD
LKRGNNSSSVLHLSALGYLLGAGASLGESADLARWLLDLQQGCPAISYAPVPDAQDILFH
PPRNEATLLAPLLPKRKAAENWWIASYSALRIGDSMSAASLEAPESPQAQKLFDDERLDP
DAPRELVASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVTPEAIEKAVGARCNRRNWEG
WIVTLSGWLGHLLQTPLPLCNDHVTLSGLKQYQIEMEFWFASHKVDVLALDKLVCQHTHG
GASRVAAEPVLLNGMFKGFIDLTFEHNGRYYVADYKSNWLGPDDSAYTLDAMEHSILEHR
YDLQYVLYLLALHRQLKARLPDYDYDQHVGGALYLFLRGTQAVSQGAYFTRPPRELIEGL
DLLFQGKPIPPKVEPAWEQGVLL
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgattggcaaacccttggccctggcgtttccgctcaaaggcagccagttgatcgaggcc
agtgccggcactggcaagacgtttaccatctccgccttgtacctgcgcctggtgctcggc
cacggcggtgatgagtccggtttcgggcgcgaactgttgccgccacaaatcctcgtggtg
acgttcaccgacgccgctaccaaagagctgcgggagcgcatccgcatccgcctggccgaa
gctgcgcgtttctttcgcgacgaaatcgaacagcccgatgcgttgatcgccgacctgcgc
gatcagtaccccccggagcagtggcccgcctgcgccaaccgcctggacatcgccgcgcaa
tggatggatgaagccgccgtctcgactatccacagctggtgccagcgcatgctgcgcgaa
catgcgttcgacagcggcagcctgttcacccagactctggaaaccgaccatagcgacctg
ctgggcgaagtgctacgcgactactggcggctgttctgctacccgatgcacgacgacgcg
ctcagctgggtgcgcagccattggggcggccccgctgcactgatgccgcgagtgcgtgcg
ctgttcggcagcgaacggcccaccgatgaaagtcgtgagccggcggagctgatcaacgcc
tgcctgcaagaacgtcgcgcagcgctggtaagcctcaaggcgccttggcaacaatgggcc
gtcgagctgcgcgatatctgcctgcaagctgttgcggccaaagctgtcgatggtcgcaag
atgcaagcgcgctacttcgaaccctggttcgagaagatcagcgcctgggccgctgatgaa
gccctggaacaactggacatcggcaccggcttcacgcgcctgacgcccgacggcatggcc
gaagcctggaaaggtgagccgccgcagcacccagggatcgaggccatggccggcctcaaa
gccagccttgacgccttgccaacaccagacgcagcggtgttgcaacatgctgccggctgg
gtcggcaaacgcttcgaagaagaaaagcgtcgccgcgcagagatgggcttcgacgacatg
ctgattcgcctcaacgccgcccttcaagccgacggtggcgagcgcctggccagtgtgatc
cgtgagcaatttccggtggcgctcattgatgaattccaagacaccgaccctgtgcaatac
agcatcttcgacagcatctaccgcatcgaggagaaccacctcgacagtggcctgttcctg
ataggcgatcccaagcaggcgatctacgcctttcgcggcgccgacatctacacctacctg
cgcgcccggcagtccaccaccggccgccatcacaccctgggcaccaacttccgttccagc
catgcgatggtcgaggcggtgaaccacgtgttccagcgagctgaagccggccgtggcgcg
tttctgtttcgtgagcccaatggcgagaatccggtgccgttccacccggtactgtcccaa
ggccgcagagagcatctgcaggttgacggccagacgctgccggccatgaacctttggcac
ctgcccaccgaccagccgatttccaacgcgctttatcgccaacaactggctgctgcctgt
gccacgcagatcgtcgcgctgctcaacggcgggcagcaaggcacggcggggtttgtcacg
aaagacagtttcaccggtgtgctgccctcaaacatcgccatcctcgtgcgcgacggcaag
gaagcccaggccgtacgtgctgaactggccagccgtggcgtgcgtagcgtgtacctctcg
gataaagactcggtgttcgccgcccaggaagcccacgacctgttggcctggctcaaggcg
tgcgccgagccggatgtcgagcgcccgctacgcgctgcccttgcctgcgtcaccttgaat
ctgtcgttggcggaactggagcgtctgaaccaagacgaactggcgtgggaatcccgcgta
atgcagttccggggttaccgctcgatctggcgtacccaaggcgtgctgccgatgctgcgc
cgcctgctccacgacttcaagttgccgcaaaccctcatcgcccgcagtgatggcgagcgt
gtgctgaccaacctgttgcacctcagtgagttgttgcaacaagccgcgtcggaactcgat
ggtgaacaggcgttgatccgtcatctggccgaacacttggcgctgtcgggccaggctggc
gaagagcagatcctgcggctggaaagcgatgagcaactggtaaaggtggtgaccatccac
aaatccaaaggcctggaatatgacttggtgttcctgccgttcatctgctcggccaaaccg
gtggatggcagtcgcttgccgctgcattaccacgatgaacagggtaagtcccaagtgagc
ctgcggccgacggccgagctgattgcccaggccgatgatgagcgcctggccgaagacctg
cgcttgttctacgtggcgttgacccgcgccaaacacgcgtgctggctgggcatcgccgac
ctcaagcgcggcaataacagcagttcggttttgcacctctcggccttgggctatctgctg
ggagccggtgcgtcgctaggcgaatccgccgacctggcgcgctggctgttggacttgcag
caaggctgcccggccatcagttatgcacctgtgccagatgcgcaagacatcctgttccac
ccgccacgcaatgaagcgaccctgctggcgccgttgctgcctaaacgcaaggctgcggaa
aactggtggatcgcttcctacagcgccttgcgcattggcgacagcatgagcgccgccagc
ctcgaagcaccggaaagcccacaggcccagaagctgttcgacgacgaacgcctcgacccg
gatgcaccacgggaattggtggcgtccggcggtgacatacaccgttttccacgcggccct
aatccaggcaccttccttcacgggttgttggagtgggccggtgaagagggtttcaacgtg
acgcctgaggcgatcgaaaaagccgtgggcgcacgctgtaatcgccgcaactgggagggc
tggatcgtcaccctcagcggctggctgggtcatctgctgcaaacgccgctgcccctgtgc
aacgaccacgtcaccctcagcggcctgaagcagtaccagatcgaaatggagttctggttc
gccagccacaaggtcgatgtgctcgccctcgacaagctggtgtgccagcacacccacggc
ggtgcctcccgcgtggccgctgagccggtgttgctcaacggtatgttcaaggggtttatc
gacctgacgttcgagcacaatggccgctactacgtggcggactacaaatccaactggctt
ggtcccgacgattcagcctacacccttgatgccatggagcattcgatcctagagcatcgg
tacgacctgcaatacgtattgtacctgctggccctgcatcgccagctcaaggcgcgtttg
ccggattacgattacgaccagcacgtcggcggcgccctgtacctgttcctgcgcggtacc
caggcggtgagccagggcgcgtatttcacccggccaccccgtgagctgatcgaggggctg
gacctgttgttccagggcaagcctatcccgcccaaggttgagcccgcctgggaacaagga
gtgctgctatga
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