Pseudomonas synxantha LBUM223: VO64_2515
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Entry
VO64_2515 CDS
T03769
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VO64_2515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfb03021
]
VO64_2515
Transcription machinery [BR:
pfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VO64_2515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
HTH_29
HTH_24
BrxR_CTD
HTH_17
MerR
Sigma70_r3
YdaS_toxin
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AKA83061
LinkDB
All DBs
Position
2815136..2815612
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AA seq
158 aa
AA seq
DB search
MYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELREPREPRAFLVAIAKGLLFD
YFRRAALEQAYLTELMLIPESEHPSPQEQHLILEDLKAIDRLLGRLSSKARAAFLYNRLD
GLGHAEIARRLGVSVPRVRQYLAQGIRQCYIALYGEPS
NT seq
477 nt
NT seq
+upstream
nt +downstream
nt
ttgtatcgcgaccatcgcggctggctgctggcctggctgcggcgcaatgtggcatgtcca
agccgcgccgaagacctgagccaggacacgttcatgcgcctgctgggccgggatgagctg
cgcgaaccccgcgaaccccgcgcgttcctggtggcgattgccaagggcttgctgttcgac
tacttccgccgcgccgccctggaacaggcctacctcaccgaattgatgctgatcccggaa
agcgaacacccttcgccgcaagagcagcacctgatcctcgaagacctcaaggccatcgac
cgtctgctcggcaggctgtcgagcaaggctcgcgccgctttcctctataaccgcctcgac
ggcctgggccatgcagaaatcgcccggcgtctcggtgtgtcggtgccccgtgtgcgccag
taccttgcccagggcattaggcagtgctacatcgcgctgtacggcgagccgtcgtga
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