Pseudomonas synxantha LBUM223: VO64_2678
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Entry
VO64_2678 CDS
T03769
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VO64_2678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfb03400
]
VO64_2678
Enzymes [BR:
pfb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VO64_2678
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VO64_2678
DNA repair and recombination proteins [BR:
pfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VO64_2678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AKA83224
UniProt:
A0AAU8TLN5
LinkDB
All DBs
Position
complement(2987850..2988662)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRERRLRWPIPEDLDVRLSGQRIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPALKHEHVDIELESGLALRYTDPRRFGAMLWSQD
PHNHELLIRLGPEPLTELFDGERLFQLSRGKSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRRAAGGISRGRYLKLAIEIKRVLAAAIERGGTTLRDFIGGDGQPGYFQQELYVYGR
GGEACKVCGTELRNVVLGQRASVFCPKCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttaccagaagtcgaaaccacccggcgcgggatcgccccgcacctggaaggc
cagcgtgtcagccgcgtggtggtgcgtgagcggcgcctgcgctggccgatcccggaagac
ctggatgtgcgcctgtccgggcagcgcatcgtgctggtggaacggcgggccaagtacctg
ttgatcaatgccgaagtgggcaccttgatcagtcacttgggcatgtcgggcaacctgcgc
ctggtggaggtcggcatgcctgcgctcaagcatgagcatgtcgacatcgaactcgaatcc
ggcctggccttgcgctacaccgatcctcgacgtttcggtgcaatgctctggagccaggac
ccgcacaaccacgaactgctgattcgcctggggccggagccgttgaccgagctgtttgac
ggcgaacgtttgttccagctgtcgcgcggcaaatcgatggcggtgaagccgttcatcatg
gacaacgcggtagtggtgggggtgggcaatatctatgcgacggaagcactgtttgcggcg
ggtattgacccgcggcgtgccgccggtggcatttcacgcgggcgctatttgaagctggcg
attgagatcaagcgggtgctggccgctgctatcgagcggggcggtactacgctgcgggac
tttatcggcggcgatgggcagccggggtatttccagcaggaactgtacgtgtatggccgt
ggcggcgaggcatgcaaggtctgtgggaccgagttgcgcaatgtggtgctggggcagcgg
gcgagtgtgttttgccccaagtgccagagctga
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