Pseudomonas synxantha LBUM223: VO64_2782
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Entry
VO64_2782 CDS
T03769
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO64_2782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfb03021
]
VO64_2782
03019 Messenger RNA biogenesis [BR:
pfb03019
]
VO64_2782
Transcription machinery [BR:
pfb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VO64_2782
Messenger RNA biogenesis [BR:
pfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VO64_2782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AKA83328
UniProt:
A0A0R2Z530
LinkDB
All DBs
Position
complement(3101944..3103203)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccagctggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctccgcagacgcctcctatctcgccggcccagacgacatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgtcctccgaaggaaggcgagcgttatttcgccctgctcaaggtcgacacgattaac
ttcgatcgccccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggcaacggttccaccgaagacctcaccggtcga
gtgatcgacctgtgcgccccgatcggcaagggccagcgtggcctgatcgtcgcaccgccg
aaagccggcaagaccatcatgctgcagaacatcgcagcgaacatcgcacgtaataaccct
gaagttcacctgatcgtgctgttgatcgatgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggtgaagtggttgcctcgacgttcgatgagccgccaacccgccacgtg
caggttgccgagatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagacgtg
gtgatcctgctcgactccatcactcgtctggcgcgtgcctacaacaccgtgatcccaagc
tccggcaaggtgctgaccggtggtgtcgatgcccacgccctggagaagcccaagcgtttc
ttcggtgctgcgcgcaacatcgaggaaggcggctcgctgaccatcatcgccaccgcactg
gtcgagaccggttcgaagatggacgaagtgatctacgaagagttcaagggtaccggtaac
atggagctgcctctggaccgtcgcatcgctgaaaagcgtgtgttccctgcgatcaacatc
aaccgttccggcacccgccgtgaagagttgctgaccgcagacgacgaactgcagcgtatg
tggatcctgcgcaagctgctgcacccgatggacgaagtggctgccatcgagttcctgatc
gataagctgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaagcgcaaataa
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