Pseudomonas synxantha LBUM223: VO64_3042
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Entry
VO64_3042 CDS
T03769
Name
(GenBank) Sigma factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VO64_3042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfb03021
]
VO64_3042
Transcription machinery [BR:
pfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VO64_3042
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
HTH_23
GerE
HTH_20
HTH_11
HTH_40
HTH_24
PhyR_sigma-like
TnsD
HTH_7
HTH_Tnp_4
Trp_repressor
Imm71
Phage_antitermQ
DUF722
DUF2774
Motif
Other DBs
NCBI-ProteinID:
AKA83588
LinkDB
All DBs
Position
3400429..3400851
Genome browser
AA seq
140 aa
AA seq
DB search
MHNACDAADVAHDTFVRILGGRHAAQIIEPRDYLATIARGLVIDRYRRHAIEQAYKQTLA
ERPEANAISEEDKAIIIETLVAVDKALATLGERARRIFMLSQLEGLTYQQIADQLQVSLT
TVKKHMIRALTECSLIVASL
NT seq
423 nt
NT seq
+upstream
nt +downstream
nt
ttgcataacgcctgcgatgcggccgatgtggcgcacgatacgttcgtgcgtattctgggt
gggcgacatgcagcgcagatcattgagccgcgggactatctggcgaccatcgccaggggc
ctggtgattgatcgttaccgtcgacacgccattgagcaggcctacaagcaaaccttggct
gaacgtcctgaagccaacgccatcagcgaagaagacaaggccatcatcattgagaccctg
gtggctgtggataaagccttggccacactcggcgagcgagcacggcgaatctttatgctg
tcgcagctcgaagggctgacttatcaacagatcgcagatcagctgcaggtctcactgacc
acagtgaagaagcacatgatccgtgcattgactgaatgttcgctgatcgtggccagcctg
taa
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integrated database retrieval system