KEGG   Pseudomonas synxantha LBUM223: VO64_3042
Entry
VO64_3042         CDS       T03769                                 
Name
(GenBank) Sigma factor, ECF subfamily
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfb  Pseudomonas synxantha LBUM223
Pathway
pfb02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pfb00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    VO64_3042
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfb03021]
    VO64_3042
Transcription machinery [BR:pfb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VO64_3042
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 Sigma70_ECF HTH_23 GerE HTH_20 HTH_11 HTH_40 HTH_24 PhyR_sigma-like TnsD HTH_7 HTH_Tnp_4 Trp_repressor Imm71 Phage_antitermQ DUF722 DUF2774
Other DBs
NCBI-ProteinID: AKA83588
LinkDB
Position
3400429..3400851
AA seq 140 aa
MHNACDAADVAHDTFVRILGGRHAAQIIEPRDYLATIARGLVIDRYRRHAIEQAYKQTLA
ERPEANAISEEDKAIIIETLVAVDKALATLGERARRIFMLSQLEGLTYQQIADQLQVSLT
TVKKHMIRALTECSLIVASL
NT seq 423 nt   +upstreamnt  +downstreamnt
ttgcataacgcctgcgatgcggccgatgtggcgcacgatacgttcgtgcgtattctgggt
gggcgacatgcagcgcagatcattgagccgcgggactatctggcgaccatcgccaggggc
ctggtgattgatcgttaccgtcgacacgccattgagcaggcctacaagcaaaccttggct
gaacgtcctgaagccaacgccatcagcgaagaagacaaggccatcatcattgagaccctg
gtggctgtggataaagccttggccacactcggcgagcgagcacggcgaatctttatgctg
tcgcagctcgaagggctgacttatcaacagatcgcagatcagctgcaggtctcactgacc
acagtgaagaagcacatgatccgtgcattgactgaatgttcgctgatcgtggccagcctg
taa

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