KEGG   Pseudomonas synxantha LBUM223: VO64_3128
Entry
VO64_3128         CDS       T03769                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pfb  Pseudomonas synxantha LBUM223
Pathway
pfb03030  DNA replication
pfb03410  Base excision repair
pfb03420  Nucleotide excision repair
pfb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pfb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VO64_3128
   03410 Base excision repair
    VO64_3128
   03420 Nucleotide excision repair
    VO64_3128
   03440 Homologous recombination
    VO64_3128
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pfb03032]
    VO64_3128
   03400 DNA repair and recombination proteins [BR:pfb03400]
    VO64_3128
Enzymes [BR:pfb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VO64_3128
DNA replication proteins [BR:pfb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     VO64_3128
DNA repair and recombination proteins [BR:pfb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     VO64_3128
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VO64_3128
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: AKA83674
UniProt: A0AAU8TPY9
LinkDB
Position
3493429..3496224
AA seq 931 aa
MSQSPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR
SSAAASRPVVISTGDKDMAQLVDGHITLVNTMTGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLEVGLDDLHLIEPDREKLLELYTLLEFKSWYEEILRDAKRVELKS
ASEVVPVAETLVEAVISVPVEAVYTTILDQATFDVWLKKLHDAPLFAFDTETTGIDAQQA
QLVGLSFAVRPHEAAYIPLTHCYIGAPDQLDRDTVLLALKPLLEDPTKLKVGQHAKFDMN
ILANCAIGGDPAQGITVRGIAFDTMLESYVLNSTATRHDMDSLAKKYLDHDTVSFQDIAG
KGAKQLTFDQIALEQAGPYAAEDADVTLRLHQELHAKLTAIPSLASVLTDIEIPLVPVLA
RIERQGALVDKELLGIQSIELGNKMVELERQAFEIAGEAFNLGSPKQLGAILYEKLGLPV
LKKTGKGQASTAEEVLAKLAEDDFLLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHT
SYHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHL
SKDEGLMNAFRNNLDVHTATAAEVFKVELGQVTSDQRRSAKAINFGLIYGMGAQKLGKDI
GVDTKTAKAYIDVYFARYPGVREYMERTRAQAADQGYVETFFGRRLYLPDINSNKPQERA
AAERTAINAPMQGTAADIIKKAMVLVDSWLTESGLDAKVILQVHDELVLEVREDLVAQVG
EKIREHMSAAAQLDVPLVVDVGVGDNWDEAH
NT seq 2796 nt   +upstreamnt  +downstreamnt
atgagccaatcgcccctcgtcctggtggacggttcttcttatctgtaccgcgccttccat
gcgctgccaccgctgaccacctccaaaggcctgccgaccggtgcggtcaagggcgtgttg
aacatgctcaaaagcctgcgcaagcagtacccggacagccccttcgcagtggtgttcgac
gccaagggcgggacctttcgcgatgagatgtacgccgaatacaaggccaaccgcccgagc
atgcccgatgacatgcgcctgcagatcgagccgctgcaccagagcgtgattgccctgggc
tttcctttactgtgcgtcgaaggcgtcgaggccgatgacgtgatcggcaccctggcccgc
agcagcgcggccgccagccgcccagtggtgatttctaccggtgacaaggacatggcgcag
ctggtcgacggtcacattaccttggtcaacaccatgaccggtagctcgatggatgttgag
ggcgtaaaggagaaattcggcgtcgctccggagcagatcatcgactatctggcgttgatg
ggagactcctccgacaatatcccaggcgttccgggcattggcccgaagaccgcttcgggc
ttgctggtaggggtgaatggcggcctcaaagagctttacgaacaattggatatcgtgccg
accttgcctatccgtggggccaagaccctgccggccaagctggaagagcacaaggagatg
gcattcctgtcctatcagttggcgacgatcaaggtcgatgtgccgctggaagtgggcctg
gatgatctgcatctgatcgagccggatcgcgagaagctgctggagctgtacacgctgctt
gagttcaagagctggtacgaagagatcctgcgcgatgccaagcgcgtggagctcaagtcg
gcgagcgaggttgtgcctgtcgccgaaacgctggttgaggctgttatatcggtaccggta
gaggcggtttacaccaccatcctggaccaggccacgttcgacgtatggctgaagaaactc
cacgatgcgccgttgtttgccttcgacaccgaaaccaccggtatcgatgcccagcaggcg
caattggtcgggctctcgtttgctgtgcggccccacgaagccgcctacatcccgctgacc
cattgctatatcggcgcgccggatcaattggaccgggataccgtgctgctggccctgaaa
ccgctgctggaagacccgaccaaactcaaggttggccagcacgccaagttcgatatgaac
atcctcgccaactgcgccatcggtggcgaccctgcacagggcatcactgtgcgtggtatc
gctttcgacaccatgctcgaatcctacgtgctgaactccacggcgacccgccacgacatg
gacagcctggcgaagaagtatctggaccacgacacggtcagcttccaggacatcgccggc
aagggtgccaagcagttgaccttcgaccagattgccctcgagcaggccggcccttacgcc
gccgaagatgccgatgtgaccttgcgcctgcatcaggaactgcacgcgaagctgaccgcg
atcccgagcctggccagtgtactgacggatatcgagataccgttggtgccggtactggcg
cgtatcgagcgccagggcgcattggtggacaaggagttgctgggtatccagagcattgag
ctgggtaacaagatggttgaactggagcgccaggcgttcgagatcgccggtgaagcgttc
aacctgggttcacccaagcagcttggggcgatcctctatgaaaaactgggcttgccggtg
ttgaagaagaccggcaagggccaggcgtccaccgccgaggaagtgctggccaagctggcc
gaagatgattttctgttgcccaaggtgctgatgcagtaccgcagcatgagcaagctcaaa
agcacctacaccgaccgcctgcctgaacagatcaacccgcgtaccgggcgcatccacacc
tcttatcatcaggccgtggcggcgaccgggcggttgtcctccagtgacccgaacttgcag
aacatcccggtgcgcactgccgaaggacggcggattcgccaagcgtttgtcgcgcctaag
ggctacaaactgctggcggcggactattcgcagatcgaactgcggatcatggcgcacctg
tccaaggacgaaggcttgatgaatgccttccgcaataatctggatgtgcacacggccacg
gcggccgaggtgttcaaggtcgagctgggccaagtcacatccgatcagcgccgtagcgcc
aaggccattaactttggcctgatctatggcatgggcgcccagaagctcggcaaggacatt
ggcgtcgataccaagacagccaaggcttatatcgatgtctactttgcccgttatcccgga
gttcgcgagtacatggagcgcacccgtgcccaggctgccgaccaggggtatgtggaaacc
ttcttcgggcgccggttgtacttgccggatatcaactccaacaagcctcaggagcgcgca
gcggcagaacgcacagcgatcaacgcgccgatgcagggcacggcggcggacatcatcaag
aaagccatggtattggtggatagctggctgaccgaatcgggcctggatgccaaggtgatc
ctgcaggtgcacgatgaactggtacttgaggtgcgggaagacttggtggcgcaggtcggc
gagaagattcgcgaacatatgagcgccgcggcacagctggatgtgccgttggtggtggat
gtgggcgtgggcgacaactgggacgaagcacactga

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