Pseudomonas synxantha LBUM223: VO64_3326
Help
Entry
VO64_3326 CDS
T03769
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO64_3326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfb03019
]
VO64_3326
03400 DNA repair and recombination proteins [BR:
pfb03400
]
VO64_3326
Enzymes [BR:
pfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VO64_3326
Messenger RNA biogenesis [BR:
pfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VO64_3326
DNA repair and recombination proteins [BR:
pfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VO64_3326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AKA83872
UniProt:
A0AAU8U034
LinkDB
All DBs
Position
3745009..3746946
Genome browser
AA seq
645 aa
AA seq
DB search
MHDTLQQVFGYPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFR
NFLHSVQISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIAPGDVVTTGFYRPNLNLLVEPVSGQHKRRRLVEWMQERANQPSIVYVTLQKTAE
QIAEHLNRHGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIGRVLNDLQ
AARGEGQWEFLLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLVEPDAL
LARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKALDYFQEQGLIELE
SKQMTEVYSLLDTDFDPVVLSAELYTGFKQHEVTEVARIHAMLDLFATEYCLGQRLAQYF
GDENAPQRCGHCSVCHGHVAYLPPPPSLPPLVDKSFMGLCGGFIHRHHEHTGELPGAERL
TRFLGGISVPLFTKLKARGIPGFAALEDYPYAEVRDWAHAQLNLL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctccagcaggtctttggttatccacagtttcgcctgggccaggaagag
acggtcagcgccgtcctggccgggcgttcggcagcagcaattttccctacggggtcgggt
aaatctttgtgctaccagctgtcggcggtgttgctgccgcacctgacgctggtggtgtcg
cctttactggcgttgatgcaggatcaattggggtttctgcagcgccatggcatttcggca
ggcagtatcgattcggcccagagccgtgatgaggccaacgatgtgatggcccgtgcgcgt
tcgggcgagttgaaaatcctgatgatttccgtggagcgcttgaagaacgagcgctttcgt
aacttcctgcacagcgtgcagatttcgctgctggtggtggatgaagcgcactgtatctcc
gagtggggccacaacttccgcccggactatttgaagctgccggactaccagcgccagttc
aatatcccacaagcgttgctgctgacggccacggcgacgcccaaggtaatcgccgacatg
caggccaagttcgcgattgcccccggggatgtggtgaccaccggcttctatcggcccaac
ctcaacctgctggtggagccggtcagcggtcagcacaagcgccgcaggttggttgaatgg
atgcaggagcgggccaaccaaccgagcatcgtctatgtcactttgcaaaaaaccgccgag
cagattgccgagcatctgaaccgccacggcattcaggccgaggcttaccacgcggggctg
ccccacgataaacgcgagggcatccagcagcgtttcatgggtgggcgttccaattgcatc
gtcgcaaccatcgcgttcggcatgggcatcgataaaagcgatatccgcaatgtggtgcac
ttcgacctgccaaagtccatcgagaactacagccaggaaatcggccgtgcagggcgcgac
gggcaaccatcggattgcctggtgttggccaatcgcgacagcctcaatgtgctggagaac
tttgtgtatggcgacacgccggagcaagagggcattggccgtgtgctcaatgacttgcag
gccgcacgcggcgaaggacagtgggagttcctgctcaggtcgctgtccgaccacagcaat
atccgcgagctgccactcaagacgttgctggtgcagttggaactcaagggcgtgatcgcg
ccgcgctacgcgttttatgccgaataccgtttcaagtacctggtcgagcccgacgctttg
ctcgcacgtttttccggcgagcggcagcagtttgtcgcggcgatcatccaggtgtgcaaa
cgtgcgaaaacctgggcaacggtggatttcgacgcgctgtatcaacagcacaatgccgag
cgcagtcgggtggtgaaggcgctggattacttccaggaacagggcctgatcgagctggaa
agcaagcagatgaccgaggtctacagtttgctcgacaccgatttcgatccggtggtgttg
agcgccgagttatacacaggcttcaagcagcatgaagtgacggaggtggcgcggattcac
gccatgctcgacctgttcgccaccgaatactgcctggggcaacgcctggcgcagtacttc
ggtgatgaaaacgctccccagcgttgtgggcattgttcggtgtgccacggccatgtcgcg
tatctgccgcctccgccaagcctgccgcctcttgtggataaaagttttatggggctgtgc
ggtggttttatccacaggcatcatgagcacactggcgagctacccggtgccgagcggctg
acgcgatttctcggtggtatcagcgtgccgttgtttaccaagttgaaggcgcggggcatt
cccggttttgccgcgctggaggactacccctacgccgaagtgcgcgactgggcccacgct
caattaaacctactctga
DBGET
integrated database retrieval system
