Pseudomonas synxantha LBUM223: VO64_4165
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Entry
VO64_4165 CDS
T03769
Name
(GenBank) Sigma factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VO64_4165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfb03021
]
VO64_4165
Transcription machinery [BR:
pfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VO64_4165
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_20
HTH_24
GerE
Xre-like-HTH
HTH_28
HTH_40
HTH_5
Trp_repressor
HTH_10
HTH_IclR
TnsD
HTH_11
Motif
Other DBs
NCBI-ProteinID:
AKA84711
LinkDB
All DBs
Position
complement(4686710..4687207)
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AA seq
165 aa
AA seq
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MIALQPSNTVEVLYNDHHHWLTGWLRRKLGCPENAADLAQDTFIRVLSARDTPTLIEPRA
FLTTVAKRVLFNFYRRQDLERAYLDALAQMPEHVAPSEEDRAIILQTLLELDQLLDGLPR
LVKRAFLLAQLDGLTYAQISAELGISIATVKRHLTKAAMRCYFAL
NT seq
498 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgcgttgcagccgtccaataccgtcgaagttctgtacaacgaccatcaccactgg
ctcaccggctggttgcgacgcaagctcggctgcccggaaaacgccgccgacctggcgcag
gacaccttcatccgcgtgctcagcgcaagggacaccccgaccctgatcgaaccccgcgcc
ttcctcaccaccgtggccaagcgcgtattgttcaacttctatcgccgccaggacctggag
cgcgcctacctcgatgccttggcgcaaatgcccgagcacgtcgcaccgtcggaagaagac
cgcgcaatcatcctgcaaaccctgctggagctggaccaactgctcgatggcttgcccagg
ctggtcaagcgggccttcctgctcgcccagctcgatggcctgacctacgcgcagatcagc
gctgaactgggcatctccatcgccaccgtcaagcgccacctgaccaaagcggccatgcgc
tgttacttcgcgttatga
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integrated database retrieval system