Pseudomonas synxantha LBUM223: VO64_4705
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Entry
VO64_4705 CDS
T03769
Name
(GenBank) Superfamily II DNA/RNA helicase, SNF2 family
Organism
pfb
Pseudomonas synxantha LBUM223
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DEAD
ResIII
SWIM
Motif
Other DBs
NCBI-ProteinID:
AKA85251
UniProt:
A0AAU8TUQ0
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Position
5254124..5257429
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AA seq
1101 aa
AA seq
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MNDLIARIVELDWQEYFDPRSLERGFEYAGENRLEIKEFGQGRLIAQCKGSGRNVYNLVI
TLEGAASRWTGIRCVCSCPVAINCKHAAATLFTLTALYDELNEPKKQVADRLNPQLENWL
ESIPKPAPVDEVQHKNTGTCLLYQLAPDAYSMRWSLEVYRARVTKKGDYSDIKPLHSMDE
ILRRTPAYMHELDIKLGRLLMLSRPYLSYGSAFQLTGEAGAEILQLALKTQRLFFDLDAG
LALNPGPVRAARFNWAVMPDGNYCPEWLSNGRELDEVLPLKPLHYLDLGNMQLGVLEPGV
DENLAIHLCGLPVIPADQVAMFSHRLSVVSQVIPPPRELTERVVDTLEPQGCLTLGSDES
YVYSQTDYRRMPFLEHRAALAFRYDTSLVSGKGTEDILFLNGTETQRIQRKPASEKALRK
TLTKIGFKTVNRKTRALPASAGEMFDLPNDEAWLAFVESGLSVLREAGWDVVIHPGFYYD
VEAVDGWYADIEESPGHEWFDLELGIEVNGERHSLLPIVLDLMRRQPKLLDAAYMAERDD
QERVLVSLGTRTHTKVALPYGRIKPLMATLGELYLRAPEGDALRLSAPDAARLSNLDALP
LVWQGGERLRDFAKRLKDSIHVHVPAPRGLNAELRGYQLEGLNWMQTLRELEVGGILGDD
MGLGKTLQALAHLLCEKQSGRLQAPALAVMPTSLIPNWMDEAARFTPQLKVLALHGAQRQ
ADFTRLTDYDLVLTTYALLPRDLEVLQPQRWSVLILDEAQNIKNPNSKAAQAARQLEAGQ
RLCLSGTPLENHLGELWSLFHFLLPGWLGDSKTFNRDYRTPIEKHGNAQRMQHLSARIKP
FLLRRKKEQVATELPPKSEIVHWVELSDAQRDVYETVRVAMDKKVRDEISRHGVARSQII
ILEALLKLRQVCCDLRLVKSAPVTKAVKAGTGKLGSLMEMLEELLSEGRRILLFSQFTSM
LALIEEELKQRGLEYSILTGDTLDRRTPVKNFQDGKTPLFLISLKAGGTGLNLTAADTVI
HYDPWWNPAVESQATDRAYRIGQDKPVFVYKMIARGTVEEKIQALQLEKAALADGVLEGG
AGAGWKLEQRDIEALFAPLPG
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacctgattgcacgtatcgtcgagttggattggcaggaatactttgaccctcgc
tcgctggagcgtggctttgagtatgctggcgaaaatcgtcttgagataaaagaattcgga
cagggcagactgattgcacagtgcaaggggtctggccgtaatgtctataacctggtgatt
accctggagggtgcagcatcacgttggacgggcatcaggtgcgtgtgttcttgcccggtg
gctatcaattgcaagcacgccgctgcaaccttgtttacgttgaccgcgctgtatgacgag
ctgaacgaaccgaaaaaacaggtggctgaccgtctgaatccgcagctcgaaaactggctt
gagagtatccccaagcccgctcctgtagatgaggtacaacacaagaacactggtacctgt
ttgctgtatcaactcgcccccgatgcttattcaatgaggtggtcactagaggtatatcgg
gcacgcgtgacgaagaaaggtgactacagcgatatcaagccgctgcactcgatggatgaa
atattgcggcgtactcccgcttatatgcatgagctggatataaagcttggtcgcttgctc
atgttgagccgtccttacctaagctacggcagcgcttttcagttaacgggtgaggcgggc
gccgaaatactccagctggcgttgaaaacccagcgtctgttttttgatttggatgctggg
ttagcgcttaacccagggcctgtccgtgccgctcgtttcaattgggccgtgatgcctgat
ggcaattattgtcctgaatggctcagcaatggtcgtgaactggacgaagtattgcctctc
aagccgctccattatctggacttgggcaacatgcagttgggcgtgcttgagcctggggtg
gatgagaacctggcgatacatttatgtggcctgcccgtgattccagctgatcaggtggcg
atgttcagtcatcggctcagtgtggtgtcccaagtcattcctccgccacgtgagctgacc
gagcgcgtcgtggatacgctggaaccacaaggctgcctcaccttgggaagcgacgaatcc
tacgtctacagccagaccgactatcgacgaatgcccttcctggaacaccgcgctgccttg
gctttccgttacgacaccagcctggtcagcggcaagggcactgaagacatcctgtttctc
aacggcaccgaaacccagcgcattcaacgcaagccggcgtctgaaaaagccctgcgcaag
acgctcacaaaaatcggcttcaaaacggtcaatcgtaaaacccgtgcgctgcctgccagt
gcaggagagatgttcgatctacccaatgatgaagcctggctggcgtttgttgagagcggg
ctgtcggttttgcgtgaggcagggtgggacgtcgtcatccatccggggttttattacgat
gtggaggctgtagacggctggtacgcggacatcgaagagtcgcccggccacgagtggttt
gaccttgagctgggcattgaggtcaacggcgagcgtcacagcctgctgccaatcgtactt
gacttgatgcgtcgtcaacccaaactgcttgacgccgcctacatggccgagcgtgatgat
caggagcgcgtgttggtcagtctgggcacccgcactcataccaaagtcgcgctgccctac
ggtcgtatcaaacccctgatggcgaccctcggcgaactctacctgcgtgcaccagaaggc
gatgcgctgcggctgagtgcgccggatgcggcacggctcagtaatctggatgcactaccc
ttggtctggcagggcggcgagcgactgcgtgatttcgccaagcgccttaaagactccatt
cacgttcatgtgccggctcctcggggcctgaacgccgaactgcgcggctatcagctcgaa
gggctgaactggatgcaaaccctgcgcgagctggaagtcggcgggatcctgggtgacgac
atggggcttggcaaaaccctgcaggcgctcgcccatctactctgcgaaaagcagtctggc
cgtttacaggcgcctgcactggcggtaatgcccaccagcttgatcccgaactggatggac
gaagctgcgcgttttacgccacagctcaaagtcctggcactgcacggtgcgcagcgtcag
gctgacttcacgcgcttgaccgattacgacctggtactcaccacctatgcactgttgccg
cgggaccttgaagtcctgcagcctcagcgctggagcgtgctgatcctggacgaagcgcaa
aacatcaagaaccccaacagcaaagcggcccaggctgctcgtcagttggaggccggtcag
cgtttatgcttgagcggtacgcctttggaaaaccacttgggtgagctgtggtcgctgttc
cacttcctgttaccgggctggttgggcgacagcaaaacctttaatcgtgattaccgtacg
cccatcgagaaacacggtaatgcgcagcgtatgcagcacctcagcgcgcgtatcaaaccg
ttcctgttgcgacgtaaaaaggagcaggtcgcgacggaattaccgcccaagtccgaaatc
gtccactgggtcgagctgagcgacgcacagcgggatgtctacgaaacggtacgcgtggcg
atggacaaaaaggtgcgcgacgaaatcagtcggcatggcgtggcccgtagccaaatcatc
attctcgaagcactgctcaaactgcgccaggtgtgctgtgacttgcgcctggtcaaatct
gcgccggtgactaaagctgtcaaggccggcactggcaagttgggcagcctgatggagatg
ctggaagagttactcagcgaggggcggcggattttgttgttctcgcaattcacctcgatg
ctggcgttgattgaagaagagctcaagcagcgtgggcttgagtattcgatcctgacggga
gacacccttgaccgacgtacgccagtgaagaacttccaggacggcaagacaccattattc
ctgatcagcctgaaagcgggcggtacgggcttgaacctgacggcggccgatacggtgatt
cattacgatccgtggtggaaccctgccgtggagagtcaggccaccgaccgggcttatcgt
ataggccaggataagccggtgtttgtgtacaagatgattgcccggggcacggtcgaggag
aagattcaggcgttgcagttggagaaggctgcattggctgatggagtgctggaaggtggc
gccggtgcgggttggaagctggagcagagggatattgaggcgctgtttgcgcccttgcct
ggctaa
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