Pseudomonas synxantha LBUM223: VO64_4708
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Entry
VO64_4708 CDS
T03769
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VO64_4708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfb03400
]
VO64_4708
Enzymes [BR:
pfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VO64_4708
DNA repair and recombination proteins [BR:
pfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VO64_4708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AKA85254
UniProt:
A0AAU8TXC2
LinkDB
All DBs
Position
complement(5260809..5264258)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGMLPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVNS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAIDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLLPKSP
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatagccgaggctgccagcgcagccaagcgcttt
accctgctgcttaccgccgacagccaaagtgccgaacggttggagcaggagctgagcttc
ttcgcccctgatttgccggtgctgcattttcccgactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtaccgcctaccggaa
ctggcccacggcgtgctggtggtgccgatcaccacggccctgcatcgcctggcgccgacc
aagttcctgctcggcagcagtctggtgctggatatcggccagaagctcgacgtagaacag
atgcgcacgcgcctggaagccagcggctaccgctgcgtcgacacggtgtacgagcacggt
gagttcgcagtgcgcggcgccctgatcgacctgttcccgatgggcagcaagttgccgtat
cgcatcgacctgttcgatgacgaaatcgagaccttgcgcaccttcgatccggaaaaccag
cgctccatcgacaaggtcgactcgatcaagctgctgccggcgcgggaattcccgctgcaa
aaagatgcggtgacgcgcttcaaggcgcgctttcgtgaacgctttgacgtggacttccgt
cgctgcccaatcttccaggacttaagcagcgggattaccccagcgggtatcgagtactac
ctgccattgttcttcgacgaaacctccaccctcttcgactacctgccccaggacacccag
gtgttctcgctgccaggcatcgagcaggcggcggaaaacttctggaacgatgtgcgcaac
cgctatgaagagcgccgcgtcgatccgtctcggcctttattgccgcccgcagaactgttc
ctgccggtggaagactgcttcgcccgtctgaaaaactggccgcgtgtagttgccagccag
caggatgtggacgccggcagtggccgtgagcgcttcccggcggggatgctgccggacctg
gcgatccaggccaaggcaacccagccgctggaagcgctgtccaatttccttggcgacttc
cccggtcgcgtgctcttcaccgccgagtccgccgggcgccgcgaagtgctgttggagcta
ttggaacgcctgaaactgcggccgaagacggtcgacagctggccggattttgtaaatagc
aaagagcgcctggcgatcaccatcgcgccgttggacgagggcttgttgctggacgacccg
gcccttgccttgatcgccgaaagcccgctgttcggccagcgtgtgatgcagcgccgtcgc
cgtgagaagcgcgcagacgccaacaatgatgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtcggtcgctacctgggcttgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgaaggcgccaag
ctctacgtgccggtggccagcctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcaccgctgcaccgcctgggctccgagacctggcagaaagccaagcgcaaggctgcc
gaacaggtgcgcgacgtggctgccgagttgctcgacatctatgcccgccgcgcggcccgc
gaaggctatgccttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcagaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgtggcgacgtgggcttcggcaaaaccgaagtggcc
atgcgcgcagccttcattgcggtacacggcggcaagcaagtggcgatcctggtgcccact
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaggtgatgagccgcttcaagtccgccaaggaagtaaacgccgccatcgccgat
ttggccgagggcaagatcgatatcgtcatcggcactcacaagctgctgtcggacgatgtg
aagatcaagaatctgggcctggtaatcatcgacgaagaacaccgcttcggtgtgcgtcag
aaagaacagctcaaggccctgcgcagtgaagtcgacattcttaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgctacg
ccgccggcgcgtcgcctgtcagtgcgcacctttgtgatggaacagaacaagagcacggtc
aaggaagcactgctgcgcgaactgctgcgtggcggccaggtttactacctgcacaacgat
gtgaagaccatcgagaaatgtgccgccgacctcgccgagctggtgcccgaagcacgcatc
gccatcggccacgggcagatgcgcgagcgcgaactcgagcaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagctgcaccag
ctgcgcgggcgcgtcgggcgcagtcaccaccaggcgtatgcctacctgctcacaccgccg
cgccaacagatcacctccgatgcggaaaagcgcctggaagcgatcgccaacacccaggac
ctgggtgccggctttgtattggccaccaacgacctggaaatccgtggcgccggcgaactg
ctcggtgatggccagagcggccagatccaggcagtcggcttcaccttgtatatggagatg
ctcgaacgcgcagtgaaagccatccgcaagggcgagcaaccgaacctcgaccaacccctg
ggcggcggcccggagatcaacctgcgcctgccggcgttgattcccgaagactacctgccg
gatgtgcatgcacggctgatcctgtacaagcgcattgcctcggcgattgacgaagaaggt
ctcaaggacctgcaagtggaaatgatcgaccgcttcggtctgctgccggaaccgaccaag
aacctggtgcgcctgaccctgctcaagttgcaggccgagcagttggggatcaagaaggtc
gacgccgggccgcaaggtgggcgtatcgaattcgaagcgcagacgccggtagaccccttg
gtgctgatcaagctgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgtgccgaagaacgcttcaataccctggaggcgctg
tttgagcgcctccttccgaaatccccttga
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integrated database retrieval system
