Pseudomonas synxantha LBUM223: VO64_4839
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Entry
VO64_4839 CDS
T03769
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VO64_4839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfb03019
]
VO64_4839
03009 Ribosome biogenesis [BR:
pfb03009
]
VO64_4839
Enzymes [BR:
pfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VO64_4839
Messenger RNA biogenesis [BR:
pfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VO64_4839
Ribosome biogenesis [BR:
pfb03009
]
Prokaryotic type
rRNA helicases
VO64_4839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AKA85385
UniProt:
A0AAU8TTT1
LinkDB
All DBs
Position
5405815..5407488
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattctcgctgcc
gtcatcgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaagacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gccatccgcaatggcgcacagatcgttgtcgccacccctggccgcctgtgcgaccacctg
cgtcgtgacgagaaagtgctgtcgaccgtgaatcacctggttctggacgaagccgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgcctccaacc
cgtcagaccgtactgttctcggccaccttgccgcagtcgatccgtgccattgccgagcgc
catctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaggccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgtgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcgggt
cgcgaaggtcgtgcactgttgttggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaggtccgcctgccggatgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctggcacccctggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccacgtgccctg
gctgcagccctgctgcgcaaagccaccaacggtcaggccctgaccctggccgccatcgag
aaagagcgcccactggtgccgaacagcgcgccacgcggtgatcgtccagagcgttccggc
gaccgtccggaccgtggtgatcgtgagcgtcgcgctccggtgccattggctgaaggccgc
gcacgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaatgagggtggcctggcgcgtgaagccatcggtcgcattcaggtgcgtgac
agcttctccctggtggagctgccggaagacggcctggaaaaactgctggccaagttgaaa
gacactcgcgttgccggtaagcagctcaagctgcgtcgctaccgcgaagattga
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