Pseudomonas synxantha LBUM223: VO64_5725
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Entry
VO64_5725 CDS
T03769
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfb
Pseudomonas synxantha LBUM223
Pathway
pfb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pfb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VO64_5725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfb03021
]
VO64_5725
Transcription machinery [BR:
pfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VO64_5725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
Motif
Other DBs
NCBI-ProteinID:
AKA86271
LinkDB
All DBs
Position
complement(6442403..6442924)
Genome browser
AA seq
173 aa
AA seq
DB search
MDIVSTSFTHLYGTHHGWLLGLLRRRLNDHWDAADLAHDTFIRILNRPLSETDQVGQRSY
LATIARGLCIDHWRRRQLEKAWLDSLAQRPQATQPSPEQRAIIVETLYEVDAMLARLPSK
VREAFLLAQLHGLPYKQIATQVGVGERMVKKYMAQALLHCAILDAELDGLLVQ
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atggatattgtgtcgacctctttcacccacctctacggcacccaccacggctggctactt
ggcctgctgcgccgacgcctgaacgaccattgggatgccgccgacctggcccacgacact
ttcatccgaatccttaaccgcccgctcagcgagaccgatcaggtaggccagcgctcctac
ctcgccaccatcgcccgtggcttgtgcatcgaccactggcgccgtcgccaactggaaaaa
gcttggttggacagcctggcgcagcgcccgcaagccacccagccgtcaccggaacagcgc
gccatcatcgttgagaccctctacgaagtggacgccatgctggcgcgcctgcccagcaag
gtgcgcgaagccttcctgctcgcacaactgcatggcctgccctataaacagatcgccacg
caagtcggcgtaggtgagcgcatggtcaagaagtacatggcccaggccctgctgcactgc
gcgatcctggacgccgagctcgacgggctgctggtgcaatga
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