Pseudomonas fluorescens A506: PflA506_0978
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Entry
PflA506_0978 CDS
T02114
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PflA506_0978 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfc03019
]
PflA506_0978 (rhlB)
Enzymes [BR:
pfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PflA506_0978 (rhlB)
Messenger RNA biogenesis [BR:
pfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PflA506_0978 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFJ56957
LinkDB
All DBs
Position
complement(1111085..1112551)
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AA seq
488 aa
AA seq
DB search
MTVLKALKKMFGKSEAEPLAPVPSAPAPKPGNRNDGQQPGRNAPAASPSKTTVTPPEQVK
PAEPAPTPVAKPRRERAPKPPVTPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLGFP
YCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALII
APTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFN
QRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKAERQTLLFSATFTEDVMNLA
KQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEV
RRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI
NFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGRKISCETPPTHLL
RAVERKRP
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaagatgttcggcaaaagcgaggctgagccgctcgcg
cctgttcccagtgctcctgcccccaagcccggcaaccgcaatgacggtcaacagcccggc
cggaacgcacccgccgcctcaccgagcaaaaccacggtgacgccgcctgaacaggtaaag
cctgccgagcccgccccgacgcctgtggccaagccccgtcgcgaacgtgcgcccaagccg
cccgtgaccccctggaaactcgaagacttcgtcgtcgaaccccaggaaggcaagacccgc
ttccacgatttcaaactggccccggaactgatgcacgccatccaggacctgggtttcccg
tactgcacgcccatccaggcgcaagtgctgggcttcaccctcgcgggcaaagacgccatc
ggccgcgcccagaccggcaccggcaagaccgccgcgttcctgatctcgatcatcacccaa
ttgctgcaaacgccgccgcccaaagagcgctacatgggtgaaccgcgtgcgctgatcatc
gccccgacccgggagctggtggtgcagatcgccaaggacgccgccgacctgaccaagtac
accggcctcaacgtcatgacgttcgtgggcggcatggacttcgacaagcagctcaagcac
cttgaggcccgtcattgcgacatcctcgtcgccaccccgggccgcctgctcgacttcaac
cagcgtggcgacgtgcacctggacatggtcgaagtgatggtactggacgaagccgaccgc
atgctcgacatgggctttatcccgcaagtacgccagatcattcgtcagacgccgccgaaa
gccgagcgtcagactttgctgttctccgcgactttcaccgaagacgtgatgaacctcgcc
aagcagtggaccaccgacccatccatcgtcgagatcgaagcactcaacgttgccagcgaa
aacgtcgagcagcatatctacgccgtcgccggtgccgacaagtacaagctgctctacaac
ctggtcaacgacaacggttgggaacgcgtgatggtcttcgccaaccgcaaggacgaagtg
cgccgcattgaagagcgcctggtgcgcgacggcgtcaacgctgcgcaactgtcgggtgat
gtgccgcagcacaagcgcatcaagaccctggaaggcttccgtgaaggcaagatccgcgtg
ctggtggctaccgatgtagccggtcgcggtattcatatcgacggcatcagccacgtgatc
aacttcaccctgccggaagtgccggacgactatgtgcaccgcattggccgtaccggacgt
gccggggcagcgggtgtgtcgatcagctttgcaggggaagatgactcgtaccagctgccg
tccatcgaggcgttgctggggcgcaagatcagctgtgagacgccgccgacgcacttgctg
cgggctgtagaacgcaaacgcccctga
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