Pseudomonas fluorescens A506: PflA506_1247
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Entry
PflA506_1247 CDS
T02114
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03030
DNA replication
pfc03430
Mismatch repair
pfc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PflA506_1247 (dnaE)
03430 Mismatch repair
PflA506_1247 (dnaE)
03440 Homologous recombination
PflA506_1247 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfc03032
]
PflA506_1247 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfc03400
]
PflA506_1247 (dnaE)
Enzymes [BR:
pfc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PflA506_1247 (dnaE)
DNA replication proteins [BR:
pfc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PflA506_1247 (dnaE)
DNA repair and recombination proteins [BR:
pfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PflA506_1247 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AFJ57320
LinkDB
All DBs
Position
1408643..1412164
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAG
IKPICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPGRFYLEVQRTNRPNDEEH
LHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgagtactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggcatgaacatgcctgcggtcgcggtt
accgaccagaacaacatgtgttccctggtcaagttctacaagaacgccatgggcgccggc
atcaagccgatctgcggcgccgacctctggctgtccaacaaagacccggataaccccctg
agccgcatcagcctgctggcgatgaacggcgtgggttatcgcaacctcaccgaactgatc
tcccgtggctttatcgatggccagcgtaacggctcgatcatcatcgagcgcgagtgggtg
gccgaagccagcgaaggcctgatcatgctctcggcggccaaagagggcgaaatcggtatc
gcgctgctgggcggcaaccctcaggaagccgaagtgctggcgcgtgagtggatgcaggtg
ttcccaggccggttctacctggaagtccagcgcaccaaccgtcccaacgatgaagagcat
ctgcacgctgccgtcgccctggccgataagctgggtgcgccgctggtggcgaccaacgat
gtgcgctttatcaagaaagaagacttcgaagcccacgaaacccgcgtgtgcatcggtgaa
ggccgggccctggatgacccgcgccgctcgaagaactacagcgaagagcagtacctcaaa
agcgccgaggaaatggcggagctgttcagcgacttgcccgaggccctggaaaactccgtc
gagatcgccaagcgctgcaacatcgaagtaaagctgggcaagcactttttgcccaacttc
ccgattcccgatggcatgaccatcgacgaatactttcgcaaagtgtcgttcgatggcctg
gaggaacgcctcagcgtcctgctgcccaaggacaccaccgaggactacgaagccaagcgc
caggtgtatgtcgatcggttgaatttcgagctggatatcatcatccagatggggttcccc
ggctacttcctgatcgtaatggactttatccagtgggcgaaaaacaacggcgtgccggta
ggtccgggccgggggtcaggtgctggctcgctggtggcctacgtacagaagatcaccgac
cttgacccgcttgaatatgacctgctgttcgaacggttcctgaacccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggatggtcgtgaccgcgtcattgaatacgtg
gccgagaaatacggccgcaacgcagtaagtcagatcatcaccttcggttctatggccgcc
aaagcggtaattcgcgacgtggcgcgggtgcagggcaagtcctacggtttggccgaccgc
ctgtcgaagatgatcccgttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgcgacttcatcaaggtcgatgaagaagccgccgaaatctgggacatggcg
cgcaagctcgaaggcgtggtgcgtaacgtcggtaaacacgctggtggcgtggttattgcg
ccgaccaagctcaccgacttttcgccgatctattgcgatgaagaaggcgacggcctggtc
acccagttcgacaaggacgacgtggaggccgccggcctggtgaagtttgacttcctcggc
ctgcggaccctgacgatcatcgactgggcactcaagaccatcaaccgcgaccgtgccaag
gtcggcgaagaaccgctggatatcgcgtttatcccgctggacgacaaaccgacctatagc
ctgctgcaaaaagccgaaaccacggcggtgttccagcttgaatcccggggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggatgacttcatcaaccgtaaacacggccgc
gccgagctggcttacccgcactccgactaccagtacgagggcctcaagcccgtactggcg
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggcc
ggctacaccctcggcggtgcggacatgctgcgtcgcgccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggcggtttcattgaaggttgcgccaccaacaacatcgatgcc
gacctggccggtaacatcttcgacctggtagaaaaattcgccggttatggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcctggttgaaagcccactac
ccggcaccgttcatggcggcggtactctcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcaccatgaagctgcgcctcgacgcgccggacgtgaacgct
tcggagttcaagttcacggtgaacgacgaaggccgcatcatctatggcctcggcgcgatc
aaaggcgtgggcgaaggtccggtggaggccattaccgaagcgcgtcaggacgggccgttc
aaggacctgttcgatttctgcgcgcgggtggatctcaagcgcatcaacaaacgtaccctc
gatggcctgatccgcagcggcgcactcgaccgtcttggcccgtattttcatgatgagccc
aaggcttaccaggccaatatcgatcgtaaccgggcggtgctgctgaccgccatggaagag
gcgatcaaggccgccgagcagaccgctcgtacccatgacagcggccacgccgacctgttt
ggcgggctgttcgtcgaagaggatgcggatgtctacgcgaatcaccgcaaggccaaggag
ctgactctgaaggaacgcctcaagggtgaaaaagacaccttgggcctgtacctcaccggt
cacccgattgacgagtacgaaggcgaaatccgccgttttgcccgtcagcgcatcatcgac
ctcaaaccggcgcgggatacccagaccgtcgccggtatgatcatcgccctgcgggtgatg
aaaaataagaagggtgacaagatgggcttcatcaccctcgatgaccgctcgggccgcatc
gaagcgtcattgtttgccgacgcgtttcactccgcccaatcgctgttgcagaccgacgcc
atggtggtggtggaaggggaggtcagcaatgatgacttctccggtggcctgcgcctgcgc
atcaagcgcgtgatgagcatggaggacgcccgcaccaacctggccgaaagcctgcgcctg
aaggtcaaaaccgaagcgcttaaaggcgatcagctacgctggttgggtgacctgctaaaa
cgccatcgtggcgcatgcccggtgaccatggagtacaccggcagcgatgccaaggccatg
ttgcagtttggtgagacgtggcgaattgatcccgctgatggcttgattcaagctttgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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integrated database retrieval system
