Pseudomonas fluorescens A506: PflA506_1773
Help
Entry
PflA506_1773 CDS
T02114
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PflA506_1773 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfc03019
]
PflA506_1773 (deaD)
03009 Ribosome biogenesis [BR:
pfc03009
]
PflA506_1773 (deaD)
Enzymes [BR:
pfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PflA506_1773 (deaD)
Messenger RNA biogenesis [BR:
pfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PflA506_1773 (deaD)
Ribosome biogenesis [BR:
pfc03009
]
Prokaryotic type
rRNA helicases
PflA506_1773 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AFJ56450
LinkDB
All DBs
Position
1938037..1939710
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaatattcttgcagcc
gtcgcagcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggtaaggacatgattggccaggcgcaaaccggtaccggcaaaactgccgcgttc
gctttgccaatcctgcactgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgcctttgaaacctacgccaagcaa
atgccaggtgtaactgttgtggccgtttacggcggcgcgcctatgggcccacaactcaag
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgccagcgacc
cgtcagaccgtactgttctcggcgaccctgccgcagtccatccgtgccattgccgaacgc
cacctgcgcgatccggagcacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgcgctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgta
gcgaccgacgttgccgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcattgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgttaccggccagaaagttgccgaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctggcgccactggtggctgacgctgaatcg
acccacggcgacctgctggaccgcctgactgccgatatcggttgcaccccgcgtgccctg
gctgcagctctgctgcgcaaagctaccaatggtcaggccctgaccctggcagccatcgaa
aaagaacgtccactggttccgaacagcgcgccacgcggtgatcgtccagagcgttccggc
gaccgtccagaccgtggtgatcgcgagcgtcgcgctccagtgccattggccgaaggccgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgcggccaagaacctgctgggt
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgcatccaggtgcgtgac
agcttctccctggtggagctgccggaagacggcctggaaaaactgctggccaagctcaaa
gacactcgcgttgccggtaagcagctcaagctgcgtcgctaccgcgaagattga
DBGET
integrated database retrieval system
