Pseudomonas fluorescens A506: PflA506_4021
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Entry
PflA506_4021 CDS
T02114
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PflA506_4021 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfc03019
]
PflA506_4021 (rne)
03009 Ribosome biogenesis [BR:
pfc03009
]
PflA506_4021 (rne)
Enzymes [BR:
pfc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PflA506_4021 (rne)
Messenger RNA biogenesis [BR:
pfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PflA506_4021 (rne)
Ribosome biogenesis [BR:
pfc03009
]
Prokaryotic type
rRNA processing factors
PflA506_4021 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AFJ55435
LinkDB
All DBs
Position
4446264..4449431
Genome browser
AA seq
1055 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EAAAPVAAPAALPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERAPREAREDTPTVAREERAPREERAPRTPR
VPREDRKPRGEREERVRELREPLDAAPAAAAAVSTEERPARQPREERAPREERQPRPPRE
ERQPRAEQAAAATEEEVLTGEEQLQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDANGN
VIEGSEETGENAEAANNEPTGAELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVED
TVAVEAPAAETPAVEAPVVEAPVVEAPVVEATTPVEAPVVPEVEVAPVRDARPETEAVAV
EPAPVVEPQPVVEAAVEAPAVEEAAPAVREVREEQTAFQWTAEPAAPVEAPTPAPVVEEA
PAPVAEVVAEPAPVVEPTPVVEPAAVVEVEAPVVAEVAAPVVEAAPASALTENGRAPNDP
REVRRRRKEAEAAAAAAKAVEHEAQEAEHEPKPLV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaaaaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgcggccctgaccaccttcatcagcctc
gccggtcgttacctggtgctgatgccgaacaacccacgtgccggcggtatttcccgtcgc
atcgaaggcgaagagcgtaacgaactgcgtgaagcgctgaacggcctgatcgcaccggcc
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgctatcaaagaagcgtccctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgtgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gaactgccttccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcacgtgcgaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggctgaagaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtgatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgagtgcctggaagctgaccgcgctcgcgtgcaagtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgagagcagcggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgtaccgccgaagttcgcgcccaagtg
ccgattccggttgccgccttcctgctcaatgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcatcctgccgaacgatcacctcgaaacgccgcacttc
gaagtccagcgcctgcgtgacgacagcccggaagcccatagcgggcagtccagctatgaa
atcgccgcggctgccgccgaagtcgaagaagtccagccagccgctgcgacccgcaccctg
gttcgccaggaagccgcggtgaagactgcaccggcccgtgccaacgcaccggtaccgacc
gaagctgccgccccggttgccgcgccggccgccctgcctgagccaagcctgttcaagggc
ctggtgaagtcgctggtcagcctgttcgccaccaaggaagagcctgctgccccggttgtg
gttgaaaaacctgccaccgagcgcccggcgcgcaacgaagaacgtcgcaacggtcgccag
cagagccgtaaccgcaacggccgccgtgacgaagagcgcaagcctcgcgaagaacgtgcc
ccgcgtgaagaacgcgcaccacgtgaagagcgtgcgcctcgcgaagcccgtgaagacacc
ccgaccgtcgcccgtgaagaacgtgcaccgcgtgaagagcgcgccccacgtaccccacgc
gttccacgtgaagaccgcaagccacgtggcgagcgtgaagaacgcgtgcgtgaactgcgc
gagcctctggacgcggcacctgccgctgccgcagccgttagcaccgaagagcgcccggcc
cgccagccgcgtgaagaacgcgcgccacgcgaagagcgccaaccgcgcccgccacgtgaa
gagcgtcaaccacgcgccgagcaagccgctgctgccaccgaagaagaagtactgaccggc
gaagagcagttgcaggaagacggccaggacaacgccgaaggcgatcgtccacgccgccgc
tcccgcggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgtgatgccaacggcaac
gtaatcgaaggttcggaagaaaccggcgagaacgcagaagctgccaacaacgagccaaca
ggcgccgaactggctgccggcttggccgttaccgctgccgttgccagttcggtcatcagc
gcccctgctgaagcccaggctcacgagcaagccgaacgtgctaccgctgccgtcgaagac
actgttgccgtagaagcgccagccgccgaaaccccagcggttgaagcgccggttgttgaa
gcgccggttgttgaagcgccagtcgttgaagccacaacccctgtcgaagccccagtggtt
ccggaagtggaagttgccccggttcgcgacgcacggccagaaactgaagcggttgccgtt
gaaccggctccagtggttgagcctcagccagtagtcgaagcggctgtagaagctccggcg
gtcgaagaagctgccccggctgtgcgtgaagttcgcgaagaacagaccgccttccagtgg
actgccgaaccggctgcaccggttgaagcgccaacacctgccccagtggtagaagaagca
ccggcaccggttgctgaagtcgtcgccgagccagctccagtggttgagccgacgccggtt
gtggagcctgcggccgtggttgaagttgaagccccggtggttgccgaagtggccgcccct
gtggttgaagctgcgcctgcaagcgccctcaccgaaaacggccgtgcgccgaatgaccca
cgtgaagtgcgtcgtcgccgcaaggaagccgaagctgctgcagccgcagccaaggcggta
gagcacgaggcccaggaagcagagcacgagcctaaacccctcgtctga
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