Pseudomonas fluorescens A506: PflA506_4306
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Entry
PflA506_4306 CDS
T02114
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03410
Base excision repair
pfc03430
Mismatch repair
pfc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PflA506_4306 (recJ)
03430 Mismatch repair
PflA506_4306 (recJ)
03440 Homologous recombination
PflA506_4306 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfc03400
]
PflA506_4306 (recJ)
DNA repair and recombination proteins [BR:
pfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PflA506_4306 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PflA506_4306 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PflA506_4306 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFJ56394
LinkDB
All DBs
Position
complement(4752111..4753820)
Genome browser
AA seq
569 aa
AA seq
DB search
MRIDPRPLPAVLPFLGELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLL
VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALEREPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCTF
PSKALAGVGVIFYVLMALRARLRSLGWYDNKPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGIKAILEVAKRDHARITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLTTDFAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDPEWHQG
VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLITKYGG
HAMAAGLTLPEANFPLFAQAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVR
WVELAYKLDVNEFRGNETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgatccccgcccattgcccgccgtcctgccttttctcggtgaactgccgccg
ctgttgacccgcctttacgccgcacgcggggtgcagtcggaggccgagctggacaagagc
ctggcgcggttgattccctatcagcagctcaagggcatcgatgcggcggtggacttgctg
gtgacggccctggagcaacgccagcgcatcctgatcgtcggtgacttcgacgccgatggc
gccacggcgagtaccgtgggcaccctgggcctgcgtttgcttggcgcggcccatgtcgat
tacctggtgcccaaccgcttcgaatacggctacggcctgaccccggaaatcgtcgcggtg
gcgctggagcgcgagccgcagttgctgatcaccgtggacaacggtatctccagcgtcgaa
ggcgtggcggcggcgaaagcggcggggttgcaggtgctggtgaccgaccaccacttgccc
ggcgatgaactgccggccgctgacgccatcgtcaatcctaaccagccgggctgcacattt
cccagcaaggccctggccggcgtcggcgtgatcttctatgtattgatggccctgcgtgca
cggttgcgcagcctgggttggtatgacaacaagccccagccgaacatcggtgaactgctt
gatctggtggccctgggcagcgtcgctgacgtggtgccgctggacgccaacaaccgcatc
ctcgtgcatcaggggctggagcgtattcgggccggtcgggcgcggccggggatcaaggcg
atcctggaagtggccaagcgtgatcatgcgcgtatcacctccaccgacctgggttttatc
ctcggcccgcgcctgaacgcggccgggcgcctggatgacatgagcctgggcatcgaatgc
ctgcttaccacggacttcgccgccgcacgggaaatggccgcgcaactggacggcatgaac
caggaccgtaaatccatcgagcaaggcatgcaacgcgaggccctggcccagctcaaggac
ctgccggtggagtcgatgccgtacggtctgtgcctgtttgacccggagtggcaccaaggg
gtgatcgggatcctcgcgtcacgcatgaaggagcgttatttccgcccgaccatcgccttc
gccgatgccggtgatggcctgctcaagggctctggacgctcggtgcaaggctttcatatc
cgcgatgcgctggcggtcgtcgccagccagcaccccaacctgatcaccaagtacggcggc
cacgccatggcggcggggctgaccttgcccgaggccaacttcccgttgtttgcgcaagcc
ttcgatgccgaagtgcgtcggcaattgcgcgaagaagacctcaccggccgcctgctttca
gacggcaccctggcggtggaagaatttcacctggaactggcccgcgccctgcgccatgcc
ggcccgtgggggcagcactttcccgagccgttgtttcacggggtattccagttggtggag
cagcgggtggtgggcgagcggcatttgaaagtggtgctcaagagcgagtgcgggtcggtg
aagctcgatggcatcgcctttggtgtggaccgcgaagtgtggccaaacccgacggtgcgt
tgggtggaattggcctacaagctggatgtgaatgaatttcgtggcaatgaaaccgtgcaa
ctgatgattgcgcacatcgaaccgcgctag
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