Pseudomonas fluorescens A506: PflA506_4541
Help
Entry
PflA506_4541 CDS
T02114
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PflA506_4541 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfc03019
]
PflA506_4541 (pnp)
03016 Transfer RNA biogenesis [BR:
pfc03016
]
PflA506_4541 (pnp)
Enzymes [BR:
pfc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PflA506_4541 (pnp)
Messenger RNA biogenesis [BR:
pfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PflA506_4541 (pnp)
Transfer RNA biogenesis [BR:
pfc03016
]
Prokaryotic type
tRNA degradation factors
PflA506_4541 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AFJ58694
LinkDB
All DBs
Position
complement(5005551..5007656)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAAAPEA
TELLGAIRSEFGAAISDAYTITVKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggttatcaaaaaattccagttcggtcagtcgaccgttaccctcgagacaggc
cgtatcgcccgtcaagcctccggcgcagtgctggttaccgttgacgacgacgtgaccgta
ctggtgaccgttgttggcgccaagaccgctgacccgagcaagggcttcttccctctgtcc
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgccctggccatc
tccggtattcctttcgatggcccgatcggcgctgcccgcgttgcgttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaacagaaagcctcgagcctggacatggtcgtt
gccggtacgtccgaagccgtattgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggtgccgtactgtttgctcacgacgagttccaggttgtgatcaacgcggtt
aaagaactggctgccgaagctgccaagccgacctggacctgggctgctgccccggaagcc
accgaactgttgggcgctatccgctccgagttcggcgctgccatctccgacgcctacacc
atcaccgtcaaggccgaccgctacgctcgcctgggtgagctgaaggaccaggtcgtcgcc
aagctgtccggtgaagaaggccagccttcctccagcgaagtcaaagctgctttcggtgag
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgc
gacacccgcaccgtgcgtccgctgaacatcgaagtcggcgtactgccgaagactcacggt
tcggcgctgttcacccgtggcgaaacccaggccctggtcgttgcgaccctgggtactgcc
cgcgacgcacaactgctggacaccctggaaggcgagaaaaaagaccccttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgtatgggcggtgcaggtcgtcgt
gaaatcggtcacggccgtctggctcgtcgttcggttcaggccatgctgcctgccgctgac
gtgttcccgtacaccatccgtgttgtatcggaaatcaccgagtccaacggttccagctcc
atggcttcggtctgcggtgcttccctggcgctgatggacgccggtgtgccaatgaaggca
ccggttgccggtatcgccatgggcctggttaaagaaggcgagaagttcgccatcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtaccgcc
aaaggtgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggtcagtcccgcaccgagctgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgttatcggtaaaggcggcgcgaccatccgtgcgatc
tgtgaagagaccaaggcttcgatcgacatcgaagacgacggttcgatcaagatcttcggc
gaaaccaaggaagcagctgaagcagcacgccagcgcgtactgggtatcactgctgaggcc
gagatcggcaagatctacgtcggcaaggttgagcgcatcgtcgacttcggcgcgttcgtc
aacatcctcccgggcaaagacggtctggttcacatctccatgctgagcgatgctcgcgtt
gagaaagtgaccgacattctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggacgtagcagcagccaaggcttcgggc
gtttaa
DBGET
integrated database retrieval system
