Pseudomonas fluorescens A506: PflA506_4828
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Entry
PflA506_4828 CDS
T02114
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PflA506_4828 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfc03021
]
PflA506_4828 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfc03400
]
PflA506_4828 (rpoC)
Enzymes [BR:
pfc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PflA506_4828 (rpoC)
Transcription machinery [BR:
pfc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PflA506_4828 (rpoC)
DNA repair and recombination proteins [BR:
pfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PflA506_4828 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AFJ55262
LinkDB
All DBs
Position
complement(5302829..5307028)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRIHETVNDRDGGSVSNTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIISAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGDEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLANEEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattgggttggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgtgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaagggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgatttcgatgcccgcatg
ggtgccgaagctgtccgcgagctgctgcacgctatcgacctggaacacgagattggtcgt
ctgcgcgaagaaattccgcaaaccaactccgaaaccaagatcaagaaactgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccgctggtgccgttggacggtggtcgtttc
gcgacgtccgacctcaacgacctgtaccgccgcgtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtggatgccttgctcgacaacggtcgtcgtggtcgcgctatcaccggttccaac
aagcgccctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcccaagaagatggcacttgagctgttcaagccattc
atcttcggcaagctggaaatgcgtggtctggcgaccaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgcccgaagtttgggacgttctcgccgaagtgattcgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccagta
ctgatcgaaggtaaggctatccagctgcatcctctggtctgtgccgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgtttgctgacctgcaggaagttgaccgtgtgttccgtgccggc
gaagccgcactgcacgccaaggtcaaggtgcggatccacgaaaccgtcaacgaccgtgac
ggcggcagcgtgagcaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgtac
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacctgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgttatcttc
gccgaccagttgatgtacacaggtttcgcttactcgaccatctccggcgtttccatcggc
gttaacgacttcgttatcccggatgaaaaagctcgcatcatcagtgctgctactgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacgcagggcgagaagtacaac
aaggtgatcgacctttggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcacggcgacgaagttgaccaagagtccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgaaacgccgatcact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaaccgctaactccggttacctgactcgtcgtctg
gtagacgttgcacaagatctggttgtaaccgagatcgattgcggcaccgagcacggcctg
ttgatgacgccgcacattgaaggcggtgacgttgtagagccgctgggtgagcgcgtattg
ggtcgtgttattgcccgtgacgtattcaagccaggtaccgaggaagttatcgttcctgcc
ggcaccctggttgacgagaagtgggtcgagttcatcgaactcaacagcatcgacgaagtg
atcgttcgctcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctatggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgcctg
cataacctcaagcacgttgagcgagtggatggtcacctggttgctgtgtcccgttccggt
gagctggcaatcgctgatgactacggtcgtgagcgtgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaagatcgtccagctgctggtaaggacatccgtcctgccgtgaagatg
gtcgacgacaacggcaaggacctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggatggtgcgaagatcgcgatcggtgatgtt
atcgcgcgtatcccgcaagaaacttcgaagacccgtgacattaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtgttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgcctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgcctggcgaacgaagagaaattcgtttcc
aagttcactcgggtgttgctgggtatcaccaaggcgtcgttgtccactgagtcgttcatc
tcggcggcctccttccaggagaccactcgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtagtcgtgggtcgtctgatcccggcaggt
accggtttggcttaccacagcgagcgtaagcgtcgccgtgatgctgacaagccgctgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcaagcggtaactga
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integrated database retrieval system
