Pseudomonas fluorescens A506: PflA506_5023
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Entry
PflA506_5023 CDS
T02114
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase, putative
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PflA506_5023 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfc03019
]
PflA506_5023 (rhlE_2)
Enzymes [BR:
pfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PflA506_5023 (rhlE_2)
Messenger RNA biogenesis [BR:
pfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PflA506_5023 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AFJ56960
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All DBs
Position
5516319..5518202
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AA seq
627 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGKEKTASSSRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDI
DNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAPRSGQPQGGRQNAPRNSSGGTTGTPPAK
RSGPRNGAPRDGQARREDSRSNNRRPARDDQPRSSEPAVQNPRGGPAPKIIHKESKADRF
PTPEQLDQLPGRPRGEKPALLTRNREA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggtttcgccctcccgatcctg
gagcggttgtttcccaacggtcacccggacaaatcccaacgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactcgcagcccaagtgcacgacagcttcaag
ctgtatgcccgcgacttgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggtgtcgacgtgctggtagcctgcccgggtcgcttg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaggccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaagtcctcgcccgc
ctaccggccaaacggcagaacctgctgttctcggcaacgttctcccaggacatcaccgcc
ctggccggcaagctgctgcataacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgcgtgttccgcctggccgccagccacaagcgctcgctgctg
gcgcacctgatcacccacggcgcgtgggaacaggtgctggtgttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcacgcaccaaagccctggccgacttcaaggccggcagcgtg
cgtatcctggtggccaccgatatcgccgcacgcggcctggatatcgaccagttgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactatgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaggccatttcgttggtcgcgccggatgaagaaaagctg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgatggcgacctgatgggcttt
gatgccagcgccgtggaggccgagaagccagaagcgcgcgagcgtccagacgtgcgcaac
ccgcgcaacccacgtggtccgaagggcgatggcccgaacggcggcggtggtggcggtggt
cgtcgcgacaaaggcaaggacaagggcaaggaaaaaaccgcgagcagcagccgtggcgaa
cgcccggcccgtgagcagaagccccgtgaaggcaccccggcccgcgaacagcgccagccg
agccagccaccacgcgccgcggccgaccgcgccccggacgagttccttgacgacgatatc
gataacttcggtaaccgcgtcgactacgtgccccaggccaaaccggcccagggccgtggc
cgtcgtccaggggctcctgcccagggcgcaggcgctccacgtagcggccagccacagggc
ggtcgccagaacgccccgcgcaacagcagcggcggcaccactggcaccccgcctgccaag
cgcagcggcccgcgtaatggcgcaccgcgtgacggccaggcccgtcgcgaagattcacgc
agcaacaaccgccgccctgcccgtgacgatcagcctcgctcgtccgagcctgcagtacaa
aacccacggggtggcccggcgccgaagatcatccacaaggagtcgaaagcggatcgcttc
ccgacacctgagcagttggatcaactgccaggccgccctcgtggtgagaaaccagcgctg
ctgactcgcaaccgcgaagcataa
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