Pseudomonas fluorescens A506: PflA506_5189
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Entry
PflA506_5189 CDS
T02114
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PflA506_5189 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfc03021
]
PflA506_5189 (rho)
03019 Messenger RNA biogenesis [BR:
pfc03019
]
PflA506_5189 (rho)
Transcription machinery [BR:
pfc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PflA506_5189 (rho)
Messenger RNA biogenesis [BR:
pfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PflA506_5189 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AFJ59086
LinkDB
All DBs
Position
complement(5684725..5685984)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccaactggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgcagatgcgtcctatctcgccggcccagatgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgtcctccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacacgatcaac
ttcgatcgccccgagaacgcgaaaaacaagattctcttcgagaacctgacgccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggctccaccgaagacttgaccggtcgt
gtgattgacctctgcgctccaatcggcaaaggccagcgtggcctgatcgtcgcaccgccg
aaagccggtaaaacgatcatgctgcagaacattgcagcgaacatcgcacgtaacaaccct
gaagttcacctgatcgtactgttgatcgatgagcgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggcccgcgcctacaacaccgtgatcccgagc
tccggcaaggtgctgaccggtggtgtcgatgcccacgccctggaaaaaccaaagcgtttc
ttcggcgctgcgcgcaacatcgaagaaggcggctcgctgaccattatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcctttggaccgtcgcatcgctgaaaagcgtgtgttccctgcgatcaacatc
aaccgctccggcacccgccgcgaagagctgctgaccgcagacgacgaactgcagcgtatg
tggatcctgcgcaagctgctgcacccgatggacgaagtcgctgccatcgagtttctgatc
gacaagctgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaaacgcaagtaa
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