Pseudomonas fluorescens A506: PflA506_5379
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Entry
PflA506_5379 CDS
T02114
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pfc
Pseudomonas fluorescens A506
Pathway
pfc03420
Nucleotide excision repair
pfc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PflA506_5379 (uvrD)
03430 Mismatch repair
PflA506_5379 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfc03400
]
PflA506_5379 (uvrD)
Enzymes [BR:
pfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PflA506_5379 (uvrD)
DNA repair and recombination proteins [BR:
pfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PflA506_5379 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PflA506_5379 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFJ56039
LinkDB
All DBs
Position
5901665..5903848
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYE
AACVRAGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIYQYSEDFPDAVTIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGI
GEKTVEAIRDHARHADVSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAKCAEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAFENTEDDEELTPLAAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQ
QQNSSSMFAGSEIPETPFSLGQQVKHAIFGEGVILNFEGAGAQARVQVNFAEGSKWLMMG
YAKLEAV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctctcttttgctgaactccctcaacgatgcccaacgccaggccgta
gcggcccccgttggccgtcagttggtcctggccggtgctggctccggtaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccaggtcgaaaacgcgtccccgcattccatcctg
tcggtgaccttcaccaacaaggccgctgccgagatgcgtcatcgcatcgagcagttgatg
ggcatcagcccggccggcatgtgggtgggcaccttccacggcctggcgcaccgcctgttg
cgggcgcattggcaggaagccggcctgagccagaccttccagattctcgacagcgacgac
cagcaacgcctggtcaagcgcgtgatccgcgaactgggcctggacgaacaacgctggccg
gcgcgtcaggcgcagtggtttatcaacggccagaaagacgagggcctgcgcccgcaacat
atccaggccagcggcgacctgttcctggccaccatgcgcagcatttatgaggcctatgaa
gcggcctgcgtgcgcgccggcgtcatcgacttctccgaactgctgctgcgtgccctcgac
ctgtggcgcgacaaccccggtttgctggcccattaccagaaacgcttccgccatatcctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggttgcgtctgttggccaag
ggcggcgacagcctgatggtggtgggcgatgacgaccaatcgatctacggctggcgcggc
gcgaaaatcgagaacatctaccagtattccgaagacttcccggacgcggtgaccatccgc
ctggagcagaattaccgctccaccgccgggatcctcaaggcggccaacgccttgatcgcc
aacaacaccgggcgcctgggcaaagagttgtggaccgacggcggggaaggcgaagcgatc
aacctgtacgcggcgttcaatgagcacgatgaagcgcgctatgtggtggaaaccatcgaa
agcgcactgaaaaccggcctggcccgtagcgatatcgcgattctgtaccgttccaacgcc
caatcgcgggtgctggaagaagcgttgctgcgcgagcgcatcccctaccgcatctatggc
ggccagcgcttcttcgaacgtgccgaaatcaagaacgccatggcctacctgcgtttgctt
gagggccgtggtaacgatgcggcgctggagcgggtgatcaatatcccggcgcgtggcatt
ggcgagaaaaccgttgaagcgatccgcgaccatgcgcgccatgccgatgtgtcgatgtgg
gaagccatgcgcttgctgatcgccaacaaaggcctgactggccgtgctgccggggcgttg
ggggtgtttgtcgagctgatcgagaacctggccgccaagtgcgcagagatgccactgcac
ctgatgactcagaccgtgatcgagcagtccgggctgatcgcctatcacgaagcggaaaaa
ggcgagaaaggccaggcccgggtagaaaaccttgaggaactggtcagcgccgcccgcgcg
ttcgaaaacaccgaggacgacgaagagctgacgccgctcgccgccttcctgggccacgcc
tcgctggaagccggcgatacccaggccgacgagcatgaagacagcatccagctgatgacc
ttgcacagcgccaaaggcctggaattcccttacgtgttcctggtgggcatggaagaaggc
ctgttccctcacaagatgagcctggaagaacccggccgccttgaagaagaacgccgcctg
gcctacgtgggcattacccgggcgatgcagaacctggtgatgacctacgccgagacccga
cgcctgtacggtagcgaaacctacaataaggtgtcgcgcttcgtacgtgaggtgcccaag
gggctgatccaggaagtgcgcttgtccaacagcgtcagccgcccgttcggcggtggccag
caacagaactccagcagcatgtttgccggttccgaaataccggaaaccccgttcagcctg
ggccagcaggtcaagcatgcgatcttcggcgaaggcgtgatcctcaacttcgaaggcgcc
ggcgcccaggcccgggtgcaggtgaacttcgccgagggcagcaagtggctgatgatgggt
tacgccaagctcgaagcggtctga
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