Plasmodium falciparum Dd2: PFDG_02041
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Entry
PFDG_02041 CDS
T01051
Name
(GenBank) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfd
Plasmodium falciparum Dd2
Pathway
pfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFDG_02041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfd03019
]
PFDG_02041
03041 Spliceosome [BR:
pfd03041
]
PFDG_02041
03009 Ribosome biogenesis [BR:
pfd03009
]
PFDG_02041
03016 Transfer RNA biogenesis [BR:
pfd03016
]
PFDG_02041
Enzymes [BR:
pfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFDG_02041
Messenger RNA biogenesis [BR:
pfd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PFDG_02041
Spliceosome [BR:
pfd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PFDG_02041
Complex C
U4/U6.U5 tri-SnRNP related factors
PFDG_02041
Ribosome biogenesis [BR:
pfd03009
]
Eukaryotic type
Pre-60S particles
Helicases
PFDG_02041
Transfer RNA biogenesis [BR:
pfd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PFDG_02041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-ProteinID:
KOB86329
UniProt:
A0A0L7M0E2
LinkDB
All DBs
AA seq
1355 aa
AA seq
DB search
MSNNIDDLFDVFEENEIPEIISIKDEEQHQEKKNHIIQNDNEIITSTNNSKNEDEEEKEE
TEKNINKQNNNINNIDKDDVNKDNVNKDNVGNHKKENLYKDINIENYKINVEYLIKNKKA
EENIKKQIQEEIYSDIQNFDKTNKNVNKIRKLSLQENNNINNNHINGKNINNNINEDNLT
GETYPNDYSIPQENNKITNKLIVEETIIENSKTINNDDVLVLEEFGGDVNCIHKCVRPQS
YVHNEIKEPLIPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLR
DKQRVIYTSPIKALSNQKYRDLGEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRGS
SLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIK
SQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFKKDNFIKAVNVIKEKMNTSEEN
HHQQHINKYTKKMRKTTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSD
TEKEVIKELYENAIRILADDDRSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQES
LLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSGEYIQMAGRAGRRGLDDRGI
VIIMLDTPLHWREAHKLFVGEANRLVSQFHLGYNMILNLLRIEGITPEFMIERSFIQYQM
KKNLSQKILAKKKVEEHIKQIFNHLTNIHLDENNNEITKDELLTKIMYNNYEQIKNNQNL
GTSSELKIKDTSSNDEVILNADKHKEIKEEFKEEYTNYSSYSTQHYNENVINKELLNYST
IFSCISNFYTMKQKLIDVGETYRYILTMKKHITPYLSLGRLLYIIQEDLRWGWCICIEGQ
LIEHKKANDNQKNKHNNSNNNNNNNHSGDHNNLKQAKSEQETLFVECLVPCNHNMKRKLT
INDDDDDNINHNNNNYGEEYQPASDRSKARWKVISFNIKCVYQLSAVVLSIDKPFDKKNE
EQIENIKTKYNTMVTCLKGEKNIPVINPNQMGIKNETFISIVKNLKFHENIINKNKLLNN
KNLNKYYQMYSKYVALQCEKNILESNIEKCRFIVLKKELKNMLVLLESLNYIEVSYNLEN
LKNEKDIKTIENSITEHIKNERIMNIKNETYKNNHEEKNYVVTMKGQIASAILSVDELVI
SELFFSNFFSKYNYDYICAFLSCFVYDESTSKEITINDPILVEGYQQIIKTANHVATKMN
ECGMNINLKDYIDKFKSAIMPIALLWARGHSFVEILSDSQIYEGSIIRTLRRLDELIRQM
ICAFRGINNDSMCETLTLATNKLRRGIPFSPSLYL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaatattgatgatttatttgacgtttttgaagaaaatgaaataccagaaatt
atttcaataaaagatgaagaacaacaccaggaaaaaaaaaaccatatcatacaaaatgac
aacgaaattataacttcaactaataatagtaaaaatgaagacgaagaagaaaaagaagaa
actgaaaaaaatataaataaacaaaacaacaatattaacaatatagataaagatgatgta
aataaagataatgtaaataaagataatgtaggaaatcataaaaaggaaaatctatacaaa
gatataaatattgaaaattataaaattaatgtagaatatttaattaagaataaaaaagcc
gaagaaaatataaaaaaacaaatacaagaagaaatatatagtgatatacaaaattttgat
aaaacaaataaaaatgtaaacaaaataaggaaattatcccttcaagaaaataataatata
aataataatcatataaacggaaaaaatattaataataatattaatgaagataatctaacg
ggggaaacatacccaaacgattatagtatccctcaagaaaataataaaataacaaataaa
ttaattgtagaagaaacgataattgaaaatagtaagactataaataatgatgatgttcta
gtattagaagaatttggaggggatgttaattgtattcataaatgtgttagacctcaaagt
tatgtacacaatgaaattaaagaacctttaattccagctaggacatataaatttgaatta
gatacttttcaaaaaaaatctatagaatgtctagaaagaaatgaaagtgtattagtatca
gctcatacttcagcaggaaaaaccgtaatagcagaatatgccattgctttaggacttcga
gataaacaaagagttatttatactagtccaattaaagccttaagtaatcaaaaatataga
gatttaggtgaagaatttaaagatgtagggctaataacaggagatatttctattaaccct
gaagcctcaattattgttatgacaaccgaaattttaagatcaatgttatatcgtggttcc
tctttaacaaaagaagtgaaatgggttatatttgatgaaatacattatatgagagataga
gatagaggtgttatctgggaagaaactattattcttttacctttaatggttagattcatt
tttttaagtgcaaccatacctaacggtattcaatttgctgaatgggtaagtagcattaaa
agtcaagcttgtcatattgtatacacagactatcgacctacacctttacaacattatata
tatccaacatctagtgaaagtgtatttttaatatgtgatgaaaataaagattttaaaaaa
gataatttcataaaggctgtgaatgtaattaaagaaaaaatgaacacatcagaagagaat
catcaccaacaacatataaataaatatacaaaaaaaatgagaaaaacaacatatgatata
gaaaaaattgttcaaatgtgtcattctagaaattatacacctttaattatttttgcattt
tctaaaaaagaatgtgaagttaatgcgacagctatgcataaaattgatttaaccagtgat
acagaaaaagaagttataaaagaattatatgaaaatgctatacgcatattagcagatgat
gatagatcccttccacaagttcaatttattttacctttacttttaagaggtataggtata
catcatggtgggctgttacctataattaaagaaatcatagaaattatgtttcaagaatca
ttattaaaagtgttatttagtactgaaacattttctatgggtattaatatgccagcaaaa
acagttgtatttacatcattaacaaaatttgatggattagaaaaaagattaataacatca
ggagaatatattcaaatggcaggaagagcaggaagaagaggattagatgatagaggtatt
gttattattatgttagatacacctttacattggagagaagctcataaattatttgttgga
gaagctaatagattagttagtcaatttcatctaggttataatatgatcttaaatttatta
cgaattgaaggcattactcctgaattcatgattgaaagatcgtttatacaatatcaaatg
aaaaaaaacctttctcaaaaaatactagccaaaaaaaaagtagaagaacatattaaacaa
atttttaatcatttaacaaatattcatttagacgaaaataataatgaaattactaaagat
gagttacttacaaaaattatgtataataattatgagcaaattaaaaataatcaaaactta
ggtacttcttcagaattgaaaattaaagatacctcttctaatgatgaagttatcttaaat
gcagataaacacaaagaaataaaagaagaatttaaagaagaatatacaaactattcatca
tacagcacacaacattataatgaaaacgttattaataaagaattattaaattatagcact
atcttttcttgtatatctaatttttacacaatgaaacaaaaattaatagatgtaggagaa
acatatcgatacatattaacaatgaaaaaacatataaccccatatttatctctaggtaga
ctattgtatataattcaggaggatttacgttggggctggtgcatatgtatagaaggtcaa
cttattgaacataagaaagcaaatgacaatcaaaaaaataaacacaacaacagcaacaat
aataataataataaccattctggtgatcataataatttaaaacaagctaagagcgaacaa
gaaacattatttgttgaatgtcttgtgccttgtaatcataatatgaaaagaaaactaacc
ataaatgatgatgacgatgataatataaatcataataataataattatggtgaagaatac
caaccagcaagtgatagatcaaaagccagatggaaagttatatcctttaatattaaatgc
gtttatcaattatctgctgttgtcctaagtatagataaaccatttgataaaaagaatgaa
gaacaaattgaaaatattaaaaccaaatataatactatggtaacttgcttaaaaggagaa
aaaaatattccagttataaatcctaatcaaatgggaataaaaaatgaaacttttatttcg
attgtaaaaaatttaaaatttcatgaaaatattataaataaaaataaactattaaataat
aaaaacttgaacaaatattaccaaatgtatagtaaatatgtagctctacaatgtgaaaaa
aatatattagaaagtaatatagaaaaatgtagatttatagttctcaaaaaagaactgaaa
aatatgctagtacttttagaaagcttaaattatattgaagtatcatataatttagaaaat
cttaaaaatgaaaaagatataaaaactattgaaaattcaataacagaacatataaaaaat
gaacgaattatgaatattaaaaatgaaacatacaaaaataatcatgaagaaaaaaattat
gttgttactatgaaaggacaaatagcaagtgcaattttaagtgtagatgaactagtaata
tcagaattatttttttcaaatttttttagtaaatataattatgattatatatgtgcattc
ttatcatgttttgtatatgatgaatccacaagtaaagaaatcacaattaatgatccaata
ttagtagaaggatatcagcaaattattaaaacagcaaatcatgtagcaacgaaaatgaat
gaatgtggaatgaacataaatctaaaggattatatcgacaaatttaaatcagcaattatg
cccatagctttattatgggcacgtggacactcatttgttgaaatattgtcagattcgcaa
atatatgaagggtctataataagaaccctaagacgattagatgaacttataaggcaaatg
atttgtgcatttagaggtattaataatgatagcatgtgtgaaacattaacattagccact
aataaattaagacgtggtatacctttttccccatctctatatttataa
DBGET
integrated database retrieval system
