KEGG   Pseudomonas ogarae F113: PSF113_0248
Entry
PSF113_0248       CDS       T01734                                 
Symbol
ygdP
Name
(GenBank) YgdP
  KO
K08311  putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
pfe  Pseudomonas ogarae F113
Pathway
pfe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSF113_0248 (ygdP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfe03019]
    PSF113_0248 (ygdP)
Messenger RNA biogenesis [BR:pfe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     PSF113_0248 (ygdP)
SSDB
Motif
Pfam: NUDIX NUDIX_4 Nudt16-like NUDIX_2
Other DBs
NCBI-ProteinID: AEV60279
UniProt: A0ABM6QT48
LinkDB
Position
complement(301830..302309)
AA seq 159 aa
MIDPDGFRPNVGIILTNDAGQVLWARRINQDAWQFPQGGINPQETPEEALYRELNEEVGL
EREDVEILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWFLLRLISNEQRVRMDLTGKPE
FDGWRWVSYWYPLGQVVTFKREVYRRALKELAPRLLTRD
NT seq 480 nt   +upstreamnt  +downstreamnt
gtgatcgatcccgatggtttccgtcccaatgtggggatcattcttacgaatgatgctggg
caggtgctatgggctcgccgtatcaatcaagacgcctggcagtttccccagggcgggatc
aacccccaggagacgccggaagaggccttgtaccgcgagttgaatgaagaagtggggctt
gagcgagaggatgtcgaaatactcgcctgcacccgaggctggttgcgctatcgtttgccg
caacgcctggtcaggacgcacagccaaccgctgtgcatcggccagaagcagaaatggttt
ctcctgcgcctgatctccaacgagcagcgggtgcggatggatttgaccggtaaaccggag
ttcgatggctggcgctgggtcagctattggtatccgttgggccaggtggtgacattcaag
cgcgaagtgtaccgacgcgctctcaaagagcttgccccgcgcctgctgacgcgcgactga

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