Pseudomonas ogarae F113: PSF113_0292
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Entry
PSF113_0292 CDS
T01734
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSF113_0292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfe03019
]
PSF113_0292
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_0292
Enzymes [BR:
pfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSF113_0292
Messenger RNA biogenesis [BR:
pfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSF113_0292
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSF113_0292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cys_Met_Meta_PP
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AEV60325
LinkDB
All DBs
Position
351890..353818
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AA seq
642 aa
AA seq
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MHSTLEQVFGYPQFRPGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQLSALLLPHLTLVVS
PLLALMQDQLAFLKHHGIAAASIDSAQGRDATNDAMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQREFNIPQVLLLTATATPKVIADM
QAKFAIAATDVVTTGFYRSNLNLLVEPVLGADKRARLVQWLGERAGQPSIVYVTLQRTAE
QIAEHLGQHGIVAEAYHAGLPHEQREDIQRRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELAGIRCVLDELK
AAGPDGQWEFLLGPLADQSNIRQLPLKTLLVQLELRRLIAPRYAYFAEYRFKFLTEPQEL
LERFEGERRDFVSAIIQTSSRARAWATVNFDGMYQQYHAERNRVVKALDYFQEKGWIELE
SKQMTEVYSVLDVDLDVQVLSAELHAYFTRHEHSEVARIHAMLELFATDHCLGYRLAQYF
GDDNAPRQCGHCSVCHGHVARLPEPPVLPALVDKNFEALCGDFIHKHEQHSGSVPSAERL
TRFLCAISVPLFTRLKARKIHGYAALEAYPYAEVRQWIQAHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcaccctggaacaggttttcggttatccacagtttcgtcccggtcaggaggcg
gccatcggcgccgtgctggccggtcggtcggcggcggccatattccccaccggctcgggc
aagtccctgtgttatcaattgtcggccctgctcttgccgcacctgaccctggtggtctca
ccgttgctggcgctgatgcaggaccagttggcgttcctcaagcaccacggcatcgcggcg
gcgagtatcgattcggcccagggccgtgacgcaaccaacgatgccatggcgcgggcccgt
tcgggcgagttgaagatcctgatgatctccgtggagcgcctgaagaacgagcgctttcgc
aatttcctgcagcaggtgccgatctcgttgctggtggtggacgaggcccactgtatttcc
gaatgggggcataacttccgacctgactacctcaagcttcccgattaccagcgtgagttc
aatattccccaggtattgctgttgacggccaccgcgacacccaaggtcatcgcggacatg
caggcgaaattcgccatcgccgccacggatgtggtgacgaccggtttctaccggtcgaac
ctcaatctgctggtcgagcccgtgctgggtgccgacaagcgcgcacggctggtgcaatgg
ctgggcgagcgtgccgggcaaccgagcattgtctacgtcaccttgcagcgaaccgccgag
cagatcgccgaacacctgggccagcacggtatcgtggccgaggcctatcacgccggtttg
ccccatgaacaacgcgaagatatccagcggcggttcatgggcgggcaatccaattgcatc
gtcgcgaccatcgctttcggcatgggcatcgacaagagcgatatccgcaatgtcgtgcat
ttcgacctgcccaaatccatcgagaactacagccaggaaatcggccgggccgggcgggat
gggcagccgtccgattgcctggtgctggccaaccgcgacagtctcaacgtgctggaaaac
tttgtgtatggcgatacgccggaacttgcaggcattcgttgcgtgctcgatgaactgaag
gccgccggccccgatggacaatgggagttcttgctggggcccctggcggaccagagcaac
atccggcaactgccgctcaagacgctgctggtccagttggagctgcgccggctgatcgcg
ccacgctatgcctatttcgcggagtaccgcttcaagttcctgacggagccacaagagctg
ctggagcgcttcgaaggcgagcgaagggacttcgtctcggccatcatccagacctccagt
cgcgcccgggcctgggccacggtgaatttcgacgggatgtaccagcagtatcacgctgag
cgtaatcgcgtggtcaaggcgctggattatttccaggaaaagggctggatcgagctggaa
agcaaacagatgaccgaggtgtacagcgtgttggacgtggacctggatgtgcaggtcttg
agtgccgagctgcatgcctatttcacccggcacgaacacagtgaagtcgcgcggatccac
gccatgctcgagttgttcgccaccgaccattgcctgggttaccgcctggcgcaatatttc
ggcgatgacaatgccccacgccagtgcggccattgttcggtgtgccatgggcatgtcgct
cgcctgccggagccgcctgtgttgccggcgcttgtggataaaaacttcgaggcgctgtgt
ggtgactttatccacaagcacgagcagcatagcggcagcgtgccgtctgccgagcgcctc
acccgcttcctgtgcgcaatcagcgtgccgctgttcacccgattgaaggcgcggaagatc
cacggctatgccgcactggaagcgtatccatacgctgaagttcgccagtggatccaagcg
cacctgtga
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