Pseudomonas ogarae F113: PSF113_0874
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Entry
PSF113_0874 CDS
T01734
Symbol
pnp
Name
(GenBank) Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSF113_0874 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfe03019
]
PSF113_0874 (pnp)
03016 Transfer RNA biogenesis [BR:
pfe03016
]
PSF113_0874 (pnp)
Enzymes [BR:
pfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSF113_0874 (pnp)
Messenger RNA biogenesis [BR:
pfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSF113_0874 (pnp)
Transfer RNA biogenesis [BR:
pfe03016
]
Prokaryotic type
tRNA degradation factors
PSF113_0874 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_N4BP1_2nd
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
AEV60904
LinkDB
All DBs
Position
1051632..1053737
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQAEA
TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtgctggtcaccgttgacgacgacgtcagcgta
ttggtgaccgttgtcggtgccaagcaagccgatccaggcaagggcttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtgtccacc
agcaagaaaaccgatccggacatcgctgcgatgatcggtacctcggctgccctggcgatc
tccggcattcctttcgatggcccgatcggcgctgcccgcgttgcgttccacgaaagcacc
ggctacctgctgaacccgacctacgagcaactgaaagcctcgagcctggacatggtcgtg
gccggtacttccgaagccgtgctgatggttgaatccgaagccaaagagctgaccgaagac
cagatgctgggcgccgtgctgttcgcccacgacgagttccaggtggtgatcaacgccgtc
aaggaactggccgccgaagccgccaagccaacctggacctgggctccgcaagccgaagcc
accgagctgctgggcgcgatccgtgccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttatgcacgcctgggcgagctgaaagaccaggtcgttgcc
aagctgtccggcgaagaaggccagccatcggccagcgacgtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggtcgc
gacacccgtaccgtacgtccgctgaacatcgaagtcggcgttctgccaaagacccacggt
tcggcactgttcacccgtggcgaaacccaggcgctggtcgttgcaacactgggcaccgcc
cgtgacgcgcaactgctggacaccctggaaggcgaaaagaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgccggtcgccgc
gaaatcggtcacggccgtctggcccgtcgttcggtccaggccatgctgcctgccgctgac
gtgttcccgtacaccattcgtgtggtatcggaaatcaccgagtccaacggttcgagctcg
atggcttcggtctgcggcgcttccctggccctgatggacgccggtgtgccgatgaaggcg
ccggttgccggtatcgccatgggtctggttaaagagggcgagaaattcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtggccggtaccgcc
aaaggcgtcaccgcactgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gaaatcgccctgggccaggccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcatcggtcagtcccgtaccgaactgtcggaaaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagaaaccaaggcttcgatcgacatcgaagacgacggttcgatcaagatcttcggc
gaaaccaaggaagcggcagaagcagcacgccagcgcgtcctgggtatcaccgcagaagcc
gagatcggcaagatctacgtcggcaaggttgagcgcatcgtcgacttcggcgcgttcgtc
aacatcctgccgggcaaggacggtctggttcacatctccatgctgagcgatgctcgcgtc
gagaaagtgaccgacatcctcaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggacgtcgcagcagccaaggcatcgggc
gtttaa
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