Pseudomonas ogarae F113: PSF113_1148
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Entry
PSF113_1148 CDS
T01734
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe03030
DNA replication
pfe03430
Mismatch repair
pfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSF113_1148
03430 Mismatch repair
PSF113_1148
03440 Homologous recombination
PSF113_1148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfe03032
]
PSF113_1148
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_1148
Enzymes [BR:
pfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSF113_1148
DNA replication proteins [BR:
pfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSF113_1148
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSF113_1148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AEV61177
LinkDB
All DBs
Position
1361798..1365319
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMGAG
IKPICGADLWLSNKDPDAPLSRISLLVMNALGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYIEVQRTNRPNDEEH
LHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDPRRSKNYSNQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EDRLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFQDEP
KAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYGNHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKLQTQDLKGDQLRWLGELFKRHRGACPITMEYVRPDAKAV
LQFGEGWRIDPADALIQALRDQFGKDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatactccctggtcgacggtctg
gtgcggatcaagcccctggtcaagaccctggtgggcatgaacatgcctgccgtggcggtc
accgaccagaacaacatgtgttcgctggtcaagttctacaaggccgccatgggtgccggg
atcaagccgatctgtggcgccgacctgtggctgtcgaacaaggacccggacgcgccgctg
agccgtatcagcctgttggtgatgaacgccctgggctatcgcaacctcaccgagctgatc
tcccgtggttttatcgacggccagcgcaacggctcgatcatcatcgagcgcgagtgggtg
gccgaggccagcgaagggctgatcatgctgtcggcggccaaggaaggtgaaatcggtctg
gccctgctcagtggcaaccccgaggaagccgagaccctggcccgtgactggatgtcggtg
ttcccggatcgcttctacatcgaagtgcagcgcaccaatcgtcccaatgacgaagagcac
ctgcacgccgccgtggccctggccgacaagatcggcgctccgctggtggcgaccaacgac
gtgcggttcatcaagcaggacgatttcgaagcccacgaaacccgtgtctgcatcggtgag
gggcgggccctcgacgatccacggcggtcgaagaactacagtaaccagcaatacctcaag
agcgccgaggaaatggccgagttgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaaacgctgcaacatcgaagtgaaactgggcaagcacttcctgcccaacttc
ccgatccccgatggcatgaccatcgacgaatattttcgcaaggtgtcttttgacggcctg
gaggatcgcctcagcgtcctgctgcccaaggacaccaccgaagattacgaagccaagcgc
caggtctatgtcgaccggttgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggactttatccagtgggccaagaacaacggcgtgccggtg
ggcccaggccgtgggtcgggtgccgggtcgctggtggcctacgtgcagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacgtttcctcaacccggaacgggtatcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgggtgatcgactacgtg
gccgagaaatatggccgcaacgcggtgagccagatcatcaccttcggttccatggccgcc
aaggcggtggtgcgcgacgtggcgcgggtgcagggcaagtcctacggcttggcggatcgt
ctgtcgaagatgattccgttcgaagtcggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgtgacttcatcaaggtcgacgaagaagccgccgagatctgggagatggcc
cgcaagctcgaaggcgtggtgcgtaacgtcggcaagcacgccgggggcgtggtgatcgcg
ccgaccaagctgactgacttctcgccgatctattgcgacgaagaaggcgacggcctggta
acccagttcgacaaggatgacgtcgaggcggcgggtctggtgaagttcgacttcctcggc
ctgcggaccctgaccatcatcgactgggcgctgaaaaccatcaaccgtgaccgggccaag
gtcggcgaagaaccgctggacattgccttcatcccgctggatgacaagccgacctacagc
ctgctgcaaaaagccgaaaccacggcggtgttccagcttgaatcccggggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacctgatcgcactggtggccctgttc
cgtccgggtccgttgcagtcgggcatggtggatgacttcatcaaccgtaagcacggccgc
gccgagctggcctacccgcactcggattatcagtacgaaggcttgaaaccggtgctggca
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtcatggcc
ggttataccctcggcggtgcggacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcaacgcggcggtttcattgagggttgcgcgaccaacggcatcgaccct
gacctggccggtaacattttcgacctggtggaaaagttcgccggctacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagactgcgtggctgaaggcgcattac
ccggcgccgttcatggccgcggtactgtcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcggaccatgaagctgcgcctcgacgcgccggatgtgaacgct
tcggagttcaagttcacggtgaacgacgaaggccgcatcatctatggcctgggcgcgatc
aagggcgtgggcgaggggccggtggaagccatcaccgaagcgcgccaggacgggccgttc
aaggacctgttcgatttctgcgcccgggttgacctcaagcgcatcaacaagcgcaccctc
gacggtttgatccgcagtggtgccctggaccggctcgggccttacttccaggatgagccc
aaggcctaccaggccaacatcgaccgcaaccgcgcggtgttgctggcggcgatggaggaa
gcgatcaaggccgccgaacagactgcccgtacccatgacagcggccacgccgacctgttt
ggcgggctgttcgtcgaagaggacgccgatgtctatggcaaccatcgcaaggccaaggag
ctgaccctcaaggagcgcctcaagggtgagaaagacaccttgggcctgtacctcacaggt
cacccgatcgacgaatacgaaggcgagatccgccgcttcgcccgtcagcgcatcatcgac
ctcaagccagcgcgcgacacgcaaaccgtcgccggcatgatcattgccctgcgggtgatg
aagaacaaaaagggcgacaagatgggcttcatcaccctcgacgaccgctccgggcgcatc
gaggcctcattgttcgccgatgcgttccactcggcgcagtcgctgttgcagactgacgcg
atggtggtggtggaaggcgaggtcagcaacgatgacttttccggtggcctgcggctgcgg
gtcaaacgggtgatgagcatggaagatgcccgtaccaacctggccgaaagcctgcgcctg
aagctgcagacccaggatctcaagggcgatcagctacgctggttgggcgaattgttcaag
cgccatcgcggtgcctgcccgatcaccatggagtatgtacgccccgatgccaaggctgtg
ttgcagttcggcgaaggctggcgaatcgatccggcggatgcgttgattcaagccttgcgt
gaccagttcggcaaagacaacgtcttcctccaataccgttga
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