Pseudomonas ogarae F113: PSF113_1471 Help Entry PSF113_1471       CDS       T01734                                  Symbol hrpA Name (GenBank) HrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism pfe  Pseudomonas ogarae F113 Brite KEGG Orthology (KO) [BR:pfe00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pfe03019]     PSF113_1471 (hrpA) Enzymes [BR:pfe01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      PSF113_1471 (hrpA) Messenger RNA biogenesis [BR:pfe03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      PSF113_1471 (hrpA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DUF3418 OB_NTP_bind Helicase_C HA2_C DEAD HA2_N AAA_19 AAA_25 AAA_22 nSTAND3 NACHT T2SSE AAA_30 SLFN-g3_helicase Motif Other DBs NCBI-ProteinID:  AEV61495 LinkDB All DBs Position 1695286..1699197 Genome browser AA seq 1303 aa AA seqDB search MTDQAPAIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARK ASLPVIRYDDNLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH RQLSLICRDMQLSLNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLSANTRLLEQLDEL EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE ASEVTAAHYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGVI EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEA WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQAPVE AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHRRALQRLLMQQL AESAKFLRGKLPGLTELGLLYRDLGRIDSLVEDILLASLDSCVLEGEASLPRDGAALASL AERKRGGWTEHAERLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF VRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQARASKHAQEGKR DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLGKQWGQVEG NT seq 3912 nt NT seq  +upstreamnt  +downstreamnt atgactgaccaagcccccgctatcgacaagctgctgaaaaacctcgaccacgccatgctc gccgaccgtcaccggttgcggcgtcagttgctcgagctgcgcaagaagcccgacgaggcc aagctggcccagtgggtgacgcgtatgcaggcgtcgtgcgatcaggtgttggcgcgcaag gcgagcctgccggtgatccgctacgacgataatttgccgattgccgccaagcgcgacgaa atcaaggacgcgctgctcaagcaccaggtgctgatcattgccggcgaaaccgggtcgggg aaaaccacgcagttgccgaagatctgcctggaaatcggtcgcggccagcacggcttgatc ggccacacccagccgcgccggatcgccgcgcgcagtgtggcgagccgggtggccgaggaa ctggccacgccgttgggggcgctggtgggctatcaggtgcggttcgaggaccagagcgac gccaacaccctgatcaagctgatgaccgacggcatcctgctggccgagacccagaacgac cgctacctcgagcgctatgacacgatcattgtcgacgaagcccacgaacgcagcctgaac atcgacttcctgctgggttacctcaagaccctgctgccacgccgtccggacctgaaagtc atcatcacctcggcgaccatcgacctggagcgcttctccaagcatttcgatgacgcgccg atcgtcgaagtctcgggtcgcacgttcccggtggacacctggtatcgcccgctgaccctg gagcaggacgaggagggcaaccgggtcgaggacgacttgaccgtcgaccaggcgatcctc gccaccctcgatgaaatcgccgcctacgagcgcagcgagcggcgcagccctggggatgtg ctggtgttcctgccgggcgagcgggaaattcgcgacgccgcggagatgctgcgcaaggcc cagctcaagcacaccgagattctgccgctgtatgcgcgactgtcgccggccgaacagcag cgcatcttccagtcccacccgggccgtcgggtggtgctggcgaccaacgtcgccgaaacc tcgctgaccgtgccgggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgc tacagctatcgggccaaggtccagcgcctgcccatcgaagccatttcccaggccagtgcc aaccagcgcaagggccgctgcgggcgggtcgagccggggatttgtgtgcggttgtacagc gaggaagattttcttggacggccggagttcactgacccggagatcctgcgcactaacctg gcggcggtgatcctgcagatgctgcacctgcgcctcggcgagatcaccgatttcccgttc atcgagccgccggacggcaaggccatcagtgacggtttcaacctgctgcaagaattgtcg gcggtggaccgcaacagccagttgaccccgctcggtcgccagttggcgcgcttgccggtg gacccgcgcatgggccgcatgctgttggaagcggcgaagctgggcagtttgcaggaagtg ttgatcgtcgccagtgccatgtcgatccaggacccccgcgagcgtccgccggagcgccaa caggcggcggaccaggcccatgcccagtggaaggacgcggattcggacttcgccgggctg gtcaacctgtggcgcggtttcgaagagcagcgccaggccctgaccgccagcccgctgcgc aattggtgccgcaagaacttcctcaactacctgcgcctgcgcgagtggcgcgattcccat cggcagttgagcctcatctgccgcgacatgcagttgagcctcaacaaagaaccggccgac ttcccgaaactgcacaaggcggtgctctcgggcctgttgagccagatcggccagaaaacc gaagacggcgactacctcggtgcccgtcagcggcggttctgggtccacccctcgtcgggc ctgggcaagaagcgtccgcaatggctgatgaccgccgagttggtggaaaccaccaagctg tatgcgcgcatggtcgccaagatcgaaccggactggatcgagccgctggccgggcacctg atcaagaaaaaccacttcgaaccccattgggagaagaagcgcgggcaggtggtggcctat gagcaaatcaccctgttcgggctcatcgttgttggtcggcggccagtacattacgggccg gtggacccggtggtttcccgtgaattgttcatccgcgaggcattggtgcgcggcgagatc cagtccaaggccaagtgcctgagcgccaatacccggttgctggagcaactcgacgagctg gaagccaaggcccgtcggcgcgacatcctggcggacgaggaaaccctgtttgccttctac gacgcgcgcttgccggccgagatccaccagaccgcgacgttcgacagttggtaccggatc aacagccagaaagacccgcaactgttgatcatgcgcgaagaagacgtgctggcccgcgaa gccagtgaagtcaccgccgcacattaccccgacaccttgcgcgtcggcgacctgaccttg ccgctgagctatcacttcgagcccaaccatccgcgcgacggcgtgacgctgcgagtgccg gcgccgctgctgccgatgctgccgccggaacgcctggaatggctggtgccgggggtgatc gaagccaagtgcatcgccctggtgcgcaacctgcccaaggccttgcgcaagaacttcgtg ccggtgccggatttcgtcaaggcggcgctgcagcgcatcaccttcgccgagggctcgttg ccgcagtccctgggccgtgaattactgcgcatgaccggggcacgggtcagtgacgaagcc tgggccgaagcggcccaacaggtggaaagccatctgcgcatgaacctggaaatcgtcgat ggtcaaggcaagttcctcggcgaaggccgcgacctggccgagctgacggcgcgttttgcc gaagccagccaggccgccctggccgtaccgcaaacggcgaaaagccaggcaccggtggag gcgaaggtcttcgcgccggtggccgagaaaacccaacagaagatcgccgggctgtcgatg acggtctacccggcgctggtggaagagggcggcgtggtcaaggaagggcgtttcccgacg ccggccgaagccgagttccagcatcgccgcgccttgcagcgcttgctgatgcagcaattg gccgagtcggcaaagttcctgcgcggcaagctgccggggctgaccgaactgggcctgctg taccgcgacctgggccgtatcgacagcctggtggaggacatcctgctcgccagcctcgac agttgcgtgctcgaaggcgaagcgagcctgccccgtgacggcgccgcactggcctccctg gccgagcgcaagcgcggcggctggaccgagcacgccgagcgcctggcgaagctgaccctg gacatcctcaagctctggcatggcctgcaaaaacgcttcaagggcaagatcgacctggcc caggccgtggcgctgaacgacatcaagcagcaactcagccacctggtctacccgggcttc gtccgcgaaaccccgcatcaatggctcaaggaattgccgcgctacctcaaggccatcgaa caacgcttcgagaagctcggtagccaggtacagaaagaccgggtctggagcggcgagcta tcgaacctctgggcccagtaccaggcgcgcgccagcaaacacgcccaggaaggcaagcgc gatccgcaactggaactgtaccgttggtggctggaggaataccgggtgtcgctgttcgcc cagcaactggggaccaaggtgccgatctcggacaagcgcctgggcaagcagtgggggcag gtggagggttga

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