Pseudomonas ogarae F113: PSF113_1706
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Entry
PSF113_1706 CDS
T01734
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSF113_1706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfe03019
]
PSF113_1706
03009 Ribosome biogenesis [BR:
pfe03009
]
PSF113_1706
Enzymes [BR:
pfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSF113_1706
Messenger RNA biogenesis [BR:
pfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSF113_1706
Ribosome biogenesis [BR:
pfe03009
]
Prokaryotic type
rRNA helicases
PSF113_1706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AEV61730
UniProt:
A0ABN5G9E4
LinkDB
All DBs
Position
1979230..1980903
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctcaacccgaacattcttgctgcc
gtcactgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggccaggcgcaaaccggtacgggtaaaaccgctgcgttc
gccctgccgatcctgcatcgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgctttcgaaacctattccaagcag
atgcctggcgttaccgttgtggccgtttacggcggtgccccgatgggcccacaactgaaa
gccatccgtaatggcgcgcagatcgttgtcgccactccgggtcgtctgtgcgatcacctg
cgtcgtgacgaaaaagtcctggctaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtcatcttcaaggccctgccagcgact
cgccagactgtattgttctcggccaccctgccgcaatcgatccgtgccattgccgagcgc
cacttgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgtcactgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacgtctgccgttctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgtcgctgcccgtggcctggacgttccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccggaatcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggccgtgcgctgctgctggtcaccccgcgtgagcgtcgcatgttgcaagtgatc
gagcgtgtaactggccagaaggtggctgaagttcgcctgccggacgcccaggccgttctc
gatgctcgcatcaagaaactgaccaacagcttgtcgccactggtggctgacgccgaatcg
acccacggtgatctgctcgatcgcctgaccgccgacatcggttgcaccccacgcgccctg
gctgccgcactgctgcgcaaggccaccaatggccaagcgctgaacctggctgcaatcgag
aaggaacgtcccctggtgccgaacaacgcaccgcgtggcgatcgtcctgagcgcaccggt
gatcgtccggaccgtggtgatcgcgagcgtcgtgctccgatcccgctggccgaaggtcgt
gctcgctgccgtaccgcgctgggtgcccgtgacggcatcgccgcgaagaacctgctgggt
gccatcctcaacgaaggcggcctggcccgcgaagcgatcggccgcatccaggtgcgtgac
agcttcagcctggtagagctgccggaagatggtctggagaagttgctgaccaagttgaaa
gacactcgtgtggctggcaagcagctcaagctgcgtcgctatcgcgaagattga
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