Pseudomonas ogarae F113: PSF113_2947
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Entry
PSF113_2947 CDS
T01734
Symbol
prtD
Name
(GenBank) PrtD/AprD
KO
K12536
ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
PSF113_2947 (prtD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pfe02000
]
PSF113_2947 (prtD)
02044 Secretion system [BR:
pfe02044
]
PSF113_2947 (prtD)
Transporters [BR:
pfe02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
PSF113_2947 (prtD)
Secretion system [BR:
pfe02044
]
Type I secretion system
Multiple protein transporter
PSF113_2947 (prtD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
SMC_N
AAA_21
nSTAND1
AAA_33
DUF87
nSTAND3
Mg_chelatase
AAA_29
STAS
NACHT
RsgA_GTPase
CdiI_2
DUF1270
Motif
Other DBs
NCBI-ProteinID:
AEV62951
LinkDB
All DBs
Position
complement(3468086..3469882)
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AA seq
598 aa
AA seq
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MNRVRSVAAAPLFKALGDYKNILVSVGCFTALINVLMLAPSIYMLQVYDRGLSSQNETTL
VMLSLMVVGFFVFIGLLEMVRSFVVIRIGSQLERRFNLQVYQAAFERNLRQGEGNAGQSL
GDLTHIRQFLTGPALFAFFDAPWFPIYLLVIYLFNVWLGVFASVGTLLLIGLACLNEAMT
KKALGQASVYSQQSSQLATSHLHNAETIQAMGMLGALRSRWFAVHSRFLGLQNQASDTGA
VISSLSKTLRLCLQSLVLGLGALLVIKGDMTAGMMIAGSILMGRVLSPIDQLIAVWKQWS
GAKLAYRRLDALLQAFAPQDDGMTLPAPKGQVSFEQVSAGPPGQRSATLQQVSFSLAAGE
VLGVLGASGSGKSTLARVLVGVWPTLAGTVRLDGADIHRWNREQLGPHVGYLPQDIELFS
GSIAENIARFRQADPQKVVAAAQQAGVHELILRLPQGYDTVLGEDGGGLSGGQKQRVALA
RAMYDRPSLVVLDEPNSNLDTVGEAALASAIAQMKAQGTSVVLVTHRSSALAQADKLLVL
DEGRLQAFGPSQQVLRALSAQSGSQDNGPRSSPPNSPQAPNGLSMSRQYQAASKPGGV
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaatagggtaaggagcgttgccgcggcgccgctgtttaaagcgctgggtgattataaa
aatattctggtcagtgttggatgttttaccgcgctgattaatgtgctgatgctcgcgcct
tcgatttacatgctccaagtgtatgaccgcgggttgtcatcgcagaacgagaccacgctg
gtgatgttgtcattgatggtcgtcggcttcttcgtattcatcgggctgctggaaatggtg
cgcagctttgtggtcatccgcatcggcagccagttggagagacgcttcaatctccaggtg
taccaggccgcgttcgagcgcaatctgcgccagggtgaaggcaacgccgggcaatccctg
ggcgacctcacgcatattcgccaattcctcaccgggccggcgctgttcgctttcttcgac
gcgccgtggtttcccatctatctgctggtgatctacctgttcaacgtgtggctcggcgtg
tttgcctccgtcggcacgctgctgctgatcggcctggcctgcctgaacgaggccatgacc
aaaaaagccttggggcaggccagcgtctattcgcaacagtccagccaactggctaccagc
catttgcacaacgccgagacgatccaggccatgggcatgctcggcgcgctgcgcagccgc
tggtttgccgtgcactcacggtttctcggcttgcagaaccaggccagcgataccggcgcg
gtgatcagttccttgagcaagaccctgcgcctgtgcctgcaatcgctggtgctgggcttg
ggggcactgctggtgatcaagggcgacatgaccgctgggatgatgattgccggctcgatt
ctgatgggccgggtattgagccccatcgaccagttgatcgccgtgtggaagcaatggagc
ggcgccaagctggcttaccggcgtctcgatgcgctgttgcaggcgtttgcaccccaggat
gacggcatgacgctgccagcgcccaagggccaggtgagcttcgaacaagtgagcgcggga
ccaccagggcaacgcagcgcgacgctgcagcaggtcagcttcagcttggctgccggggaa
gtgctcggtgtgctgggggcttccggttccggcaagtcgaccctggcccgagtcctggtg
ggggtgtggccgaccctcgcggggacggtgcgcctcgacggggccgacattcatcgctgg
aatcgcgagcaactcggcccgcacgttggttatctgccccaggatatcgagctgttcagc
ggcagcattgccgagaacatcgcccggtttcgccaagccgatccgcaaaaagtcgtcgcc
gccgcgcagcaggccggggtccatgagctgatcctgcgcctgccccagggctatgacacg
gtgctgggggaggatggcggcggtttgtccggcgggcagaaacaacgtgttgcgctggcc
cgggcgatgtacgaccggccgagcctggtggtgctcgacgagcccaactccaacctcgac
acggtcggcgaggcggcgctcgccagtgccattgcgcagatgaaggcccagggcaccagc
gtcgtgctggtcacccatcgttcctcggcattggcccaggccgacaagttgctggtgctc
gacgaaggtcggctacaagcctttggtccgagccagcaagtgttacgggcgctttccgcc
cagtcgggctcacaggacaacgggccgcgcagctcaccgccgaacagtccccaggccccc
aacggactgagcatgagtcgccagtaccaggccgccagcaaacccggtggtgtatga
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