Pseudomonas ogarae F113: PSF113_3313b
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Entry
PSF113_3313b CDS
T01734
Symbol
hupB
Name
(GenBank) HupB
KO
K03530
DNA-binding protein HU-beta
Organism
pfe
Pseudomonas ogarae F113
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfe03032
]
PSF113_3313b (hupB)
03036 Chromosome and associated proteins [BR:
pfe03036
]
PSF113_3313b (hupB)
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_3313b (hupB)
DNA replication proteins [BR:
pfe03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PSF113_3313b (hupB)
Chromosome and associated proteins [BR:
pfe03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PSF113_3313b (hupB)
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PSF113_3313b (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_bac_1
Motif
Other DBs
NCBI-ProteinID:
AEV63313
LinkDB
All DBs
Position
complement(3909321..3909575)
Genome browser
AA seq
84 aa
AA seq
DB search
MNRNDLVEAITSSADLPKSTAGRALEALTTIISTALKSGENVTLVGFGTFAVKARAARDG
RNPRTGPPSRSLLRKFLASKPVSR
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaaacgatctcgtcgaggccataacgagctctgccgacctcccgaaatccact
gccggacgcgcactggaagcccttacaaccatcatatccactgcattgaaaagcggtgag
aacgtcaccttggttggttttggtacctttgcggtgaaagcgcgtgcagcgcgcgacggc
cgtaaccctcgaacggggccaccatcaagatcgctgcttcgaaaattcctagcttcaaag
ccggtaagtcgctga
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