Pseudomonas ogarae F113: PSF113_3985
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Entry
PSF113_3985 CDS
T01734
Symbol
topA
Name
(GenBank) TopA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfe
Pseudomonas ogarae F113
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfe03032
]
PSF113_3985 (topA)
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_3985 (topA)
Enzymes [BR:
pfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PSF113_3985 (topA)
DNA replication proteins [BR:
pfe03032
]
Prokaryotic type
DNA Topoisomerases
PSF113_3985 (topA)
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSF113_3985 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AEV63982
UniProt:
A0ABM6R2V7
LinkDB
All DBs
Position
complement(4689318..4691930)
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKDKARKQLVSRMGVDPEHGWKARYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIESEFGKKYLPDTPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
SVGAGDFELRAKGRILKFDGYTRVMPQITKPGDDDVLPDMAQGDVMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPDSGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCAAPQKDPEGRPAVIRYSRKTK
EQYVQTEVDGKPTGWKAFYDGGKWTVQDKS
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagccagccgccaagcgcggcaaggcagctgctggtgaa
gcgccggcgctgtcgccgaaagacaaggcgcgcaagcagctggtctcacgcatgggggtc
gatccggaacacggctggaaagccaggtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgccgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccattggtggggatgacagccgc
tacaagcgcgtggtgttcaacgaaattaccaagaaggccatccaggaagccttctcccag
ccgggcgagctggacatcgatcgggtcaacgcccaacaggcgcgtcgcttcctcgaccgc
gtggtgggctacatggtctcgcccctgctgtgggccaagatcgcccgcggcctgtcggcc
ggtcgcgtgcagtcggtcgccgtgaagctggtggtggagcgcgagcgggagatccgtgcg
ttcatccctgaagagtactgggaagtccacgccgacctcggcaccgccaagggcgccacc
gtgcgcttcgacgtggcccgggaaaagggcgaggccttcaagccgctcaacgaagcccag
gccatggccgcgctggagaagctcaaggcttccagctacagcatcgtcaagcgcgaagac
aaaccgaccagcagcaagccgtcggcgccgttcatcacctccacgctgcaacaggccgcg
agcaatcgcctgggctttggcgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctttcggtcgatgccgtggcg
atggcgcgcacttatatagaaagcgagttcggcaagaagtacctgccggacacgccgaac
gtctacagcagcaaggaaggcgcgcaggaggcgcacgaagcgattcgtccgtccgacgcc
aataccgagccaagcaagctgtcgggcatggaacgcgacgccgagcgtctctacgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcaatacctgtcgaccacggtc
agcgtcggtgcgggcgacttcgagttgcgcgccaagggccgcatcctgaagttcgacggc
tacacacgtgtcatgccgcagatcaccaagcctggggatgatgacgtcctgccagacatg
gcccagggcgacgtgatgaagctgatcaagcttgatccgacccagcacttcaccaagcca
ccggcccgttactccgaagccagcctggtcaaggaaatggaaaagcgcggcatcggtcgt
ccttcgacctacgcagccatcatctccaccatccaggaccgcggctatgtggcgctgcac
aaccgtcgtttctattcggaaaagatgggtgacatcgttaccgagcgtttgtccgagagc
ttctcgaacctgatggactacggcttcaccgccggtatggaagagaacctcgacgatgtg
gcccagggcgagcgcgactggaaaaacgtcctcgacgagttctacggcgacttcaagaaa
aagctcgaagtggccgagagcccggacagcggcatgcgcgccaaccagccggtcatgacc
gacatcccgtgcctgacctgcgggcgtccgatgcaaatccgtaccgcctcgaccggcgta
ttcctggggtgctcgggctacagcctgccacccaaggagcgctgcaaggccacggtcaac
ctggtgccgggcgacgaaatcgctgcggacgacgagggcgaatcggaatccctggtgctg
cgcggcaagcatcgctgcccgatctgcagtacggcgatggacgcctacctgctggatgaa
aagcgcaagctgcacatctgcggcaacaacccggactgtgccggctacgagatcgaagaa
ggcacttatcgcatcaagggctacgaaggcccgagcctggaatgcgacaagtgtggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aaaaacacccgcaaactgctcaagagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcctgagctcaagtgcgagaaggtcaacgacacctacatcctgcgcgacggtgcc
tccggcctgttcctggcggccagccagttcccgaaaaaccgtgagacccgtgcgccgctg
gtgatggaaatcgtgccgcacaaggacgagatcgatccgaagtaccatttcctctgcgca
gcgccgcagaaggatccggaagggcgcccggcggtcattcgctacagccgcaagaccaag
gagcagtacgtgcaaaccgaagtcgacggcaagccgaccggctggaaagccttttacgac
ggcggtaagtggacggtgcaagacaagagctga
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