Pseudomonas ogarae F113: PSF113_4919
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Entry
PSF113_4919 CDS
T01734
Name
(GenBank) Deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pfe
Pseudomonas ogarae F113
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_4919
Enzymes [BR:
pfe01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
PSF113_4919
DNA repair and recombination proteins [BR:
pfe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
PSF113_4919
Prokaryotic type
PSF113_4919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AEV64908
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All DBs
Position
5710809..5712260
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AA seq
483 aa
AA seq
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MQLIWLRSDLRLHDNTALAAAAAQGPCVAVYLTSPEQWRTHDDAPCKIDFWLRNLGALSV
ALDELNIPLLIRDAAHWQQAPHVLLKLCRELNIGAVHINEEYGLNETRRDAEAARALNDQ
GIEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLAATPVRQAPTGIT
RDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHIDDYQGERDFPAKPGTSQLS
AYLVAGVVSPRQCLHAALQANQGEFESGSAGVVTWINELLWREFYKHILVGYPRVSRHRA
FRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLL
IDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKFDREGLFIK
RWLPELNDLDRQQVHSPNTQGGLFGAVNYPAPIVDLSQSRARALAAFRNLPTRQDAAFEG
MGD
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgatctggctgcgcagcgacttgcgcctgcacgacaataccgctcttgcggcg
gccgcagcccaaggaccctgcgtggcggtgtacctgaccagccccgaacaatggcgcacc
catgacgacgcaccgtgcaagatcgatttctggttgcgcaacctcggcgcattgagcgtg
gccctggacgaattgaacatcccactgctgatccgcgacgcagcgcattggcagcaggcc
ccacacgtgctgctcaagctgtgtcgagaactgaatatcggcgccgtgcatatcaacgaa
gagtacggcctgaatgaaacgcgacgcgacgccgaggccgcccgcgcattgaatgaccag
ggcattgagtttcacagtcacctcgaccaattgctgttcaagcccggcagcgtgctgacc
aagaccggcaactatttccaagtgttcagccagttccgcaaggtctgctacagccgtctg
catttctcattgccgagcctggccgccacgccggtccggcaggctcccaccggtattacc
cgcgacccggtgccgacgcaagtcgatgggttcgcaccgcccagcgaagcgctacgagcg
ctctggcctgctggggaaaccgaagcccggcggcgcctggacacctttgtcgaccagcac
atcgacgattaccaaggcgaacgggactttcccgccaagcccggcaccagccagctatcg
gcctatctggtggccggggtggtgtcaccgcgtcagtgcctgcacgccgcgctgcaagcc
aaccaaggtgaattcgaaagcggaagtgccggtgttgtgacctggatcaatgaattgctc
tggcgtgagttctataaacatattctagtgggctatccacgcgtgtcgcgccatcgtgcg
ttccgccccgaaaccgaggcactagcctggcgcaaggcccccgcagaattggaggcctgg
aagcaagcacgcaccggcctgccaattatcgatgcggccatgcgtcaattgctggagacc
ggctggatgcacaaccgcttgcggatggtcgtcgccatgttcctgaccaagaacctgttg
atcgattggcgcgaaggtgagcgctttttcatgcagcacctgatcgacggcgacctggcc
gccaacaatggcggctggcagtggagcgcctccaccggcaccgattcggcaccctggttc
cgcatcttcaacccgttgagccagtcggaaaaatttgaccgcgagggcctgttcatcaaa
cgctggctacctgagctgaacgatctggacaggcaacaggtccatagcccaaatacccag
ggcggcttgtttggtgccgtgaattatccggcaccgattgtcgacttgagccaatccagg
gcacgcgcgctggcagcgttcagaaacctgccgacgcgacaggacgcagcctttgaagga
atgggcgattag
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