Pseudomonas ogarae F113: PSF113_5301
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Entry
PSF113_5301 CDS
T01734
Symbol
rpoC
Name
(GenBank) RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSF113_5301 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfe03021
]
PSF113_5301 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_5301 (rpoC)
Enzymes [BR:
pfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSF113_5301 (rpoC)
Transcription machinery [BR:
pfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSF113_5301 (rpoC)
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSF113_5301 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AEV65282
UniProt:
A0ABM6R7R6
LinkDB
All DBs
Position
complement(6133996..6138195)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGNEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGARIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLATEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgcgctggcaaaagttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccagttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagcggtccgcgaactgctgcacgcgatcgacctggagcacgagattggccgt
ctgcgcgaagaaattccgcaaaccaactccgaaaccaagatcaagaaactgtccaagcgt
ctgaagttgatggaggccttccagggctccggcaacctgccggagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccactggttccgctcgatggtggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgcctgctcgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagcggtcgatgcactgctcgacaacggtcgtcgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaaacgtgttgactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgcctaagaaaatggctctggagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctcgcgactaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtctgggacgttcttgccgaagtgattcgcgaacacccg
gttctgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgttggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtgccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacgcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggatctgcaggaagttgaccgtgtgttccgtgctggc
gaagccgcactgcacgccaaggtcaaggtgcggatcaacgaaaccgtgaacgatcgtgat
ggtggcagcgtcaagaacacccgtatcgtcgacaccactgttggccgtgcgctgttgttc
caggtcgttccaccgggcctgtcgtacgacgtcgtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcctattcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgctaccgaggaa
gtgaaagagatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggcgaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgccatggcaacgaagtcgaccaggaatccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagaccccgattacc
gcgaacttccgtgaaggcctgagcgtactccagtacttcatctccactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaacggcgaactccggttacctgactcgtcgtctg
gtggacgttgcccaggatctggtcgtgaccgagatcgattgcggcactgaacatggcctg
gtaatgactccgcacattgaaggcggtgacgttgtagagccattgggtgagcgcgtattg
ggtcgtgtcatcgcccgtgacgtattcaagccgggtaccgaggacgtaatcgttcctgcg
ggcaccctggttgacgagaagtgggttgagttcatcgagctcaacagcatcgacgaagtg
atcgtacgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggcacgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcggccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctcaagcacgttgagcgagtggatggtcacctggttgctgtgtcccgttccggt
gagctggccatcgctgacgacttcggtcgcgagcgcgagcgctacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggtgccatcgtggccaagtgg
gacccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagaccgacgaattgaccggtatgaccaacattgaa
gtactcgatgcgaaagatcgtccagctgccggcaaggacatccgtcctgctgtgaagatg
gtcgacgacaacggcaaggatctgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgttgcggacggtgcgcggatcgcgatcggtgatgtt
atcgcccgtatcccgcaggaaacttcgaaaactcgcgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgtcgcctggtcattacaccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctcggacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtcgagatcgctgaatccggcgactcgagtttcatcaagggcgaccagatg
gaactgactcacgtactggtggaaaacgagcgcctggcgaccgaagacaagtttgtctcc
aagttcactcgcgtgctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgagtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcttgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtttggcctatcacagcgagcgcaagcgtcgccgtgatgctgacaagccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcactgaactcgagtggtaactga
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integrated database retrieval system
