Pseudomonas ogarae F113: PSF113_5371 Help Entry PSF113_5371       CDS       T01734                                  Symbol rpoD Name (GenBank) RpoD   KO K03086   RNA polymerase primary sigma factor Organism pfe  Pseudomonas ogarae F113 Pathway pfe02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:pfe00001]  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     PSF113_5371 (rpoD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:pfe03021]     PSF113_5371 (rpoD) Transcription machinery [BR:pfe03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      PSF113_5371 (rpoD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma70_ner Sigma70_r3 Sigma70_r1_1 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 TMPIT Motif Other DBs NCBI-ProteinID:  AEV65343 LinkDB All DBs Position 6208770..6210617 Genome browser AA seq 615 aa AA seqDB search MSGKAQQQSRIKELILLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEV APDKDALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE VPPPIDPKAVKADDDTDDDDAEASDDEEEAESGPDPVIAAQRFGAVADQMEITRKALKKH GRNNKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALDRLRQQERAIMQLCVRDARMP RADFLRQFPGHEVDESWTDALAKGKSKYAEAIGRLQPDIIRCQQKLTALETETGLTIAEI KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE SLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL RHPTRSEHLRSFLDE NT seq 1848 nt NT seq  +upstreamnt  +downstreamnt atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcctattgggtcgtgag cagggctacctgacttacgcggaggtcaacgaccacctgccggaggatatttcagatccg gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgaggtt gctccagataaggatgcccttatgctggccgacgccgataccgacgaggcggccgctgaa gaagcggccgcagcgttggcagcggtcgagaccgacattggtcgcaccaccgaccccgtg cgcatgtacatgcgtgaaatgggtacggtagagctcctcacacgtgaaggcgaaatcgaa atcgccaagcgtattgaagaaggcatccgtgaagtgatgggcgcaatcgcgcacttcccc ggcacggttgaccatattctctccgagtacacccgcgtcaccaccgaaggtggtcgcctg tccgacgtcttgagcggctatatcgatccggacgacggcatcgcgccgcctgccgccgaa gtgccgccgccgatcgatccgaaagccgtcaaggccgacgacgacaccgatgacgacgac gccgaagcgagcgacgacgaggaagaagccgaaagcggcccggatccggtcatcgcagca cagcgtttcggcgctgtggccgaccagatggaaatcacccgcaaggcgctgaaaaagcac ggccgcaacaacaagcaggcgattgccgagctgttggcactggccgagctgttcatgccg atcaagctggtaccgaagcaattcgaaggcctggtcgagcgtgttcgcagtgccctggat cgcttgcgccagcaagagcgcgcgatcatgcagctttgcgtgcgtgatgcccgcatgccg cgtgccgatttcctgcgccagttccctggccacgaagtcgacgaaagctggaccgatgca ctggccaagggcaagagcaaatacgccgaagccattggtcgcctgcaaccggacatcatt cgttgccagcagaagctgaccgcgctggaaaccgaaaccggtttgacgatcgccgaaatc aaggacatcaaccgtcgcatgtcgatcggcgaggccaaggcccgtcgcgcgaagaaagag atggtcgaagcgaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgcggc ctgcaattcctcgatctgatccaggaaggcaacatcggcctgatgaaggcggtggacaag ttcgaataccgtcgcggctacaagttctcgacttatgccacctggtggatccgtcaggcg atcactcgctcgatcgccgaccaggcccgcaccattcgtatcccggtgcacatgatcgag acgatcaacaagctcaaccgtatttcccggcagatgctgcaggaaatgggtcgcgaaccg acgccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggtattg aagatcgccaaagagccgatctccatggaaaccccgatcggcgatgacgaagactcccat ctgggtgacttcatcgaagactccaccatgcagtctccgattgatgtcgccactgtcgag agtctcaaggaagcgactcgcgaagtactctccggcctcactgcccgtgaagccaaggta ctgcgcatgcgcttcggcatcgacatgaataccgaccacacccttgaggaagtcggtaag cagttcgatgtaacccgtgagcggattcgtcagatcgaagccaaggcattgcgcaaactg cgccacccgacgcgaagcgagcatctacgctccttcctcgacgagtga

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