Pseudomonas ogarae: PSF113_5409
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Entry
PSF113_5409 CDS
T01734
Name
(GenBank) Exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pfe
Pseudomonas ogarae
Pathway
pfe03030
DNA replication
pfe03430
Mismatch repair
pfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSF113_5409
03430 Mismatch repair
PSF113_5409
03440 Homologous recombination
PSF113_5409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfe03032
]
PSF113_5409
03400 DNA repair and recombination proteins [BR:
pfe03400
]
PSF113_5409
Enzymes [BR:
pfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSF113_5409
DNA replication proteins [BR:
pfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSF113_5409
DNA repair and recombination proteins [BR:
pfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSF113_5409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AEV65381
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All DBs
Position
6257290..6257997
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AA seq
235 aa
AA seq
DB search
MSIFSWLRPAQPMLPEEIQRRLEHLPAASALSECELREQRWVVLDLETTGLNLNKDQVLS
IGAVVIEDGAIDFSQQFERTLQCDKQKLGPSVLIHGLAPSAIAAGSDPAEALLAFMEFVG
DSPLLAFHAPFDSHMLGRALKDYLGYRLQHPFLDVADMAPMLCPQAHLRKSGLDEWIDWF
KLQVFDRHNASADALATAELALILFSRARQKQIHSPLDLQQRLSHWKRRQQAPSL
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
gtgagcattttttcctggctgcgcccagcccaacccatgttgcccgaagaaatacaaagg
cgcctggaacaccttccagcggcgtcagccttgagtgaatgcgagttgcgggaacaacgc
tgggtcgtgctggacctggaaaccaccggcttgaacctgaacaaggaccaggtgctgtcc
atcggcgcggtcgtcatcgaagacggcgccatcgacttcagccagcagttcgaacgcacc
ctgcaatgcgataagcagaaactcgggcccagtgtgttgatccatggcctggcacccagc
gccattgccgccggcagcgacccggccgaggcgctgctggcgttcatggaattcgtcggc
gacagcccgctgctggcctttcacgcaccattcgattcgcacatgcttgggcgcgccttg
aaggactacctgggctatcgcctgcagcatccgttcctcgatgtggcagacatggccccg
atgctttgcccgcaagcccatctgcgcaagtcaggcctggacgagtggatcgactggttc
aagctgcaagtcttcgaccgccacaacgccagcgccgacgccctggccacggcggaactg
gcgctgatcctgttcagccgcgcccgccagaaacagatccacagcccgcttgacctgcaa
cagcgcctgagccactggaaacggcggcagcaggcgccttcgctctaa
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