Pseudomonas ogarae F113: PSF113_5505
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Entry
PSF113_5505 CDS
T01734
Symbol
rhlE1
Name
(GenBank) RhlE1
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSF113_5505 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfe03019
]
PSF113_5505 (rhlE1)
Enzymes [BR:
pfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSF113_5505 (rhlE1)
Messenger RNA biogenesis [BR:
pfe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSF113_5505 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEV65477
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All DBs
Position
6372429..6374300
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AA seq
623 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
GRKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDD
IDNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQPQGRQNGPRNSNGSSTGTPP
AKRSGPRNGAPRDGQARRDDTRPRRPAHDDQPRQEPAVQNPRGNQPKIMHKESKADRFPT
PEQLDQLPSRPRGEKPALLTRNR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tatacccagcctaccccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcgcagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gagcggttgtttcccaacggtcacccagacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactggcggcccaggtccacgagagcttcaag
gtctacgctcgcgacctgaagttcgtcagcgcctgcatttttggcggcgtgggcatgaac
ccccaggtccaggccatgtcccgtggcgtcgatgtactggtcgcctgccccggtcgcttg
ctggacctggctggccagggcagcgtcgacttgtcccacgttgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaagtcctcgcccgc
ctgcccgccaagcgtcagaacctgctgttttcagcgacgttctccaaggacatcaccgac
ctggccggcaagctgctgcacaacccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgcgtcttccgcctgccagccagccacaagcgtgccctgctg
gcgcacctgattaccgccggtgcctgggaacaggtcctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgccggctgtggcgatccac
ggtaacaagagccagaatgcccgcaccaaggccctcgccgacttcaaggccggcgaagta
cgcatcctggtggccactgatatcgccgcccgtggcctggacatcgaccagttgcctcac
gtggtcaacttcgagttgccaaacgtcgatgaagactacgtgcaccgtatcggccgtact
ggtcgggccggtcgttcgggcgaagcgatctcgctggtcgcgccggacgaagagaagctg
ctcaaaagcatcgagcgcatgaccaagcagaaaattgccgacggcgacctgatgggcttc
gatgcgagcaccatcgaggccgagaagcctgaagtgcgcgaacgtccggacgtgcgcaat
ccgcgcaatgcccgtggcccacgcggcgacggtccgaatggcggcggtggtggtggcggc
ggccgcaaagacaaaggcaaggacaagggcaaggaaaaatcggccagcaacagcaatggc
cgcggcgaacgccctgcccgcgagcagaagccccgcgaaggcacaccggcccgtgaacag
cagcgtccagccccacgcgccgcagccgatcgcgccccggacgagttcctggacgacgat
atcgataacttcggtaaccgcgtcgactacgtgccacagcagaaaccggcccagggccgt
ggtcgccgcccgggtgccccggcacagggtgcagctgcaggcgcgccgcgcagcggccag
ccacaaggccgccagaacggtccgcgcaacagcaacggctcgtccaccggtacgccaccg
gccaagcgcagcggcccacgcaacggtgccccgcgtgacggccaggctcgtcgcgatgac
acccgcccgcgccgcccggcccatgacgaccagcctcgtcaggaacccgccgtgcagaac
ccgcgcggcaaccagccgaagatcatgcacaaggagtcgaaagccgatcgtttcccgacg
cctgagcaactggatcaactgccaagccgtccacggggcgaaaaaccggcattgctgacg
cgcaatcgctga
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