Pseudomonas ogarae F113: PSF113_5792
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Entry
PSF113_5792 CDS
T01734
Symbol
icmF1
Name
(GenBank) IcmF1
KO
K11891
type VI secretion system protein ImpL
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe02025
Biofilm formation - Pseudomonas aeruginosa
pfe03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
PSF113_5792 (icmF1)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
PSF113_5792 (icmF1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pfe02044
]
PSF113_5792 (icmF1)
Secretion system [BR:
pfe02044
]
Type VI secretion system
Imp/Vas secretion system core components
PSF113_5792 (icmF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
Bax1-I
AAA_10
T7_gp14
Motif
Other DBs
NCBI-ProteinID:
AEV65766
LinkDB
All DBs
Position
complement(6672386..6675886)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKAFFSFMTRWVIPLLGLIALSLIIWFVGPLLDWLVPEGRRWALIILVFAVWIAYRVLRI
IQARRQAAEVMRSLAAQTPPDPTSIATAEELETLRQRMDEALALLKKAKLGGDERRNLYE
LPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVGGTRNCDWWFTDQAVLLDTAG
RYTTQDSDATIDKAAWLGFLGLLKKQRARRPIDGAFIAISLSDLLLGSDAERAAHAAAIR
LRIQELYTQLGVRFPIYLMLTKLDLVPGFMEYFDTLSKEERAQVWGMTFALDDGKSSDSP
LAHLQSEFTGLEQRLNDRLVERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPN
AFEERVLLRGVYFTSGTQEGSPIDRLIGSMAQSMNLDRQHLARQTGTGRSYFIEKLFTAV
AFAERGLVGVDPKVERRRKWIARGVLASTVVLVLVVSTLWWVSYRANQAYIAQVDQKVAP
LGQTVQNLSPAQRDVLAVLPLLNAVKHLADDAPSWAEGLGLYQGDMLEAESGSVYRKLLI
AVFAPRLLTRIEEQLHSGGNSDFLYEGLKAYLMLADTEHYDADFIKAWIALDWDRSLPRD
LPAEQRQALTAHLQALFERRPPLARLDARLVEDLRRQLQQLPVAQRVYDRIKRQKLPEGI
PDFRINEAAGRDAALVFSRKSGKPLGEPLSGFFTVKGYRQGFLLTSLSQTGTLAEEQWVL
GHEEADQQNVASLAADVRRLYFQDYLRQWDALLADIDFVPITSVAQAADVLRVISGPTSP
LKKLLVAVAKETDLQQDERLLAAQGAPVEGGVDKLKERLGSLLGQEQATQNAPAQSDDPI
TAHFAELNSIVSKSEGEPAAIDGLLADMNALYVQVSAMVGASGDALLGEAKNQATAAATR
VSLNAERQPPLVQGLVKSVVNSTTNSMMGGVRNQLNAAWTSEVVNIYRQSLAGRYPMSPG
SARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSTPTWRWQPGAAQKLGIAPGVLQTFQ
RAATIRDAFFRSGGTQPMVRFELKPVAMDSTITQFLLDLDGQQLSYDHGPSRPTAMQWPN
PGSIGVVRISIMPPSSSGRSGITLDGPWAWFRLLEQSDLTAGNSPDRFNLRLRVDGASAS
YELRANSAFNPFKSRVLSGFSLPERL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcgtttttcagttttatgacccgctgggtcatcccattgctggggctgatcgcc
ctgagcctgatcatctggttcgttggcccgctcctcgattggctggtgcccgaaggccgc
cgctgggccttgatcatcctggtgtttgcggtatggatcgcctaccgggtattgcgcatt
atccaggcgcgccgtcaggccgccgaagtgatgcgcagcctggccgcgcaaaccccaccg
gacccgaccagcatcgccaccgccgaggagctcgaaaccctgcgccagcgcatggacgaa
gccttggccctgctcaagaaagccaagctgggcggtgacgagcgccgcaacctctacgag
ctaccgtggtacgtgatcatcggcccgccgggttcgggcaagaccaccgcgctggtcaat
tccgggctgcatttcccactggccgcgcaactgggcgccggtgccgtacgcggtgtcggc
ggtacacgcaattgcgattggtggttcaccgaccaggcggtcctgctcgacaccgccggc
cgctacaccacccaggacagcgacgcgaccatcgacaaggccgcctggctgggcttcctt
ggcctgttgaaaaaacaacgggcccggcgcccgattgatggcgcgttcatcgccatcagc
ctgtccgacctgctgctgggcagcgacgccgagcgcgccgcccatgccgccgcaatccgg
ctgcggatccaggagctgtacacccaactgggcgtgcgcttcccgatctacctgatgctg
accaagctcgacctcgtgcccggattcatggagtatttcgataccctgagcaaggaagag
cgcgcccaggtctggggcatgaccttcgccctggacgatggcaagagcagcgacagcccg
ctggcgcacctgcaaagtgagttcaccggccttgagcagcgcctcaacgaccgcttggtg
gaacgcctgcaacaagagcgcgacccggcgcggcgcgatctgatctacggtttcccgcag
cagttcggcgccttgaaagattgcctgcaaagcttcctcgaaggcgtgttcaaacccaac
gccttcgaagagcgtgtgttgctgcgcggcgtgtatttcaccagtggcacccaggaaggc
agcccgatcgatcgcctgatcggctccatggcccagagcatgaacctggatcgtcagcac
ctggcgcgccagaccggcaccgggcgcagctacttcatcgaaaaactcttcaccgccgtg
gccttcgccgagcgcgggctggtgggcgtcgatccgaaagtcgagcggcggcgcaagtgg
atcgcccgcggcgttctggcctccaccgtggtgttggtgttggtggtcagcacgttgtgg
tgggtcagctaccgcgccaaccaggcctacattgcccaggtcgaccagaaggtcgcgcca
ttggggcaaaccgtgcagaacctcagcccggcgcaacgcgacgtcctcgccgtgttgccg
ttgctcaacgccgtgaaacatcttgctgacgacgcaccgagctgggccgaaggcctgggc
ctttaccagggcgacatgctcgaagccgagtccggcagtgtctatcgcaagctgctgatc
gcagtgttcgcgccacgcttgctgacgcgcatcgaagagcaactgcacagcggcggcaat
tcggatttcctctacgaaggcctgaaggcctacctgatgctcgccgacaccgagcattac
gatgccgacttcatcaaggcctggatcgccctggattgggaccgcagcctgccacgggat
ttgccggccgagcaacgccaggccctgaccgcgcatttgcaggcgctgttcgagcggcgt
ccgccactcgcgcgcctcgatgctcgcctggtcgaagacctgcgccgccagttgcagcaa
ttgccggtggcccagcgggtctacgaccggatcaagcgccagaaactgcctgaaggcatc
ccggacttccgcatcaacgaagccgccgggcgtgatgcggcgctggtgttcagccgcaag
agcggcaagccattgggcgagccgctgagcgggttcttcaccgtcaagggctatcgccag
ggcttcctgctcaccagcctgagccagaccggcaccctggccgaagagcaatgggtgctg
ggccacgaagaggccgatcagcagaacgtcgccagcctggccgccgatgtgcgtcgcctg
tacttccaggattacctgcgccaatgggacgccttgctggccgacatcgactttgtgccg
atcaccagcgtggcccaggccgccgatgtgctgcgggtgatttccggcccgacctcaccg
ttgaaaaagctgttggtggcggtggcgaaggaaaccgacctgcaacaggatgaacgcctg
ctggccgcccaaggtgcgccggtagaaggcggtgtggacaaactcaaggaacgcctgggc
agcttgctcggccaggagcaggcgacgcaaaacgcgccggcgcaaagcgatgacccgatc
accgcgcacttcgccgagctcaacagcatcgtcagcaaaagcgaaggcgagccggcggcc
atcgacggcttgctggcggacatgaacgctttgtacgtgcaggtcagcgccatggtcggt
gccagcggcgacgccttgctcggcgaagccaagaaccaggccacggccgccgctacgcgc
gtcagcctcaacgccgaacgccagccgccgctggtgcagggcttggtcaagtcggtggtc
aactccaccaccaacagcatgatgggcggggtgcgcaaccaactgaacgccgcctggacc
agcgaagtggtgaacatctatcgccagtccctggccgggcgctatccgatgtcgccaggc
agtgcgcgggacgcgaccctggatgacttcggccagttcttcggcgtcggcggggtgatg
gacaactacttccgcaagtacctgcaaccctacgtcgacacctcgaccccaacctggcgc
tggcagccgggcgcggcgcagaagctcggtatcgcccctggcgtgctgcagaccttccag
cgcgcggcgaccatccgcgatgcgttcttccgttccggcggcacgcagccgatggtccgt
ttcgagctcaagccggtggcgatggactcgaccatcacccagttcctgctcgacctcgac
ggccagcaactgagctacgaccacggcccaagccgcccgaccgccatgcagtggccgaac
ccgggcagcatcggcgtggtgcggatatcgatcatgccgccgtcgtccagcggtcgctca
ggcatcaccctggatgggccgtgggcctggttccggctgctggagcaatcggacctgacc
gccggcaactcgccggaccgcttcaacctgcggctgcgggtcgatggcgccagcgcctct
tatgagctgcgggccaacagcgccttcaacccattcaagagccgggtgctcagcggcttc
agcctgccggagcggctatga
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