Pseudomonas ogarae F113: PSF113_5823
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Entry
PSF113_5823 CDS
T01734
Symbol
clpB4
Name
(GenBank) ClpB
KO
K11907
type VI secretion system protein VasG
Organism
pfe
Pseudomonas ogarae F113
Pathway
pfe02025
Biofilm formation - Pseudomonas aeruginosa
pfe03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pfe00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
PSF113_5823 (clpB4)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
PSF113_5823 (clpB4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pfe02044
]
PSF113_5823 (clpB4)
Secretion system [BR:
pfe02044
]
Type VI secretion system
Imp/Vas secretion system core components
PSF113_5823 (clpB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
AAA_5
AAA_22
AAA_16
ClpB_D2-small
nSTAND3
AAA_7
Clp_N
NACHT
Sigma54_activat
TniB
AAA_29
AAA_33
SRP54
Mg_chelatase
T2SSE
NBD_SMAX1
Hpr_kinase_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AEV65797
LinkDB
All DBs
Position
complement(6717583..6720168)
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AA seq
861 aa
AA seq
DB search
MINVDLQQLIQALDAETRSDLSRSAEQCVARGADKVLVEDLMLGLLERPQGLLARALQDA
QVSAGELSAALQPRMGHSASRNPVFAPELVQWLQDALLVANLELGCSQVGQAALILALLR
NPLRYAGSAYQALLTRLNVDRLKDFALSQQTHPVADHSAKPDDSLLARFTHDLTRQAREG
QLDPVLCRDGEVRQMIDILVRRRKNNPIVVGEAGVGKTAIVEGLALRIAAAEVPSVLEGV
ELLSLDMGLLQAGASIKGEFERRLKGVIDEVKASPKSIILFIDEAHTLIGAGGNAGGADA
ANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAR
VYENSHGIYLRDDAVVAAAQLSARYLAGRQLPDKAVDVLDTACARVRISLAAAPHSLERL
RGELAEGERQRQALRRDAQAGLSIDLQALEALEVRLEAIEDERRTLEIHWTEQRILAERL
LALRQQLAKVRDGAVDQPLSVEALEAALHETHGTLVAAQVQERLVSFEVCPRLVAEVISA
WTGVPLAQLAREHSLKVASFATDLRARIRGQEPAVRALDRAMRAAAAGLNKPDAPVGVFL
LVGPSGVGKTETAHALADLLYGGDRFITTLNMAEFQEKHTVSRLIGAPPGYVGFGEGGML
TEAVRQKPYSVVLLDEVEKTDPDVLNLFYQIFDKGLANDGEGREIDFRNTLILMTSNLGS
ERINELCENGTKPSAECLEESIRPILSQHFKPALLARMCVVPYYPLNGPVLRELVEVKLD
HLGERLHRRQLGFSYCGHLVNHLVERCSRNDRGARLIDQLLDLHLMPLVADRLLAAMAGG
EQLRHVHAVLNGDASLACEFS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacgtagaccttcagcaactgatccaggcgttggacgccgaaaccagaagcgat
ctgtcgcgctcggccgagcaatgcgtcgcccgtggggcagacaaagtcctggtggaagac
ttgatgctgggcttgctggaacgtccgcaggggctgctcgcgcgagccttgcaagatgcc
caggtaagcgcaggtgaactgagcgctgcgctgcaaccacggatggggcacagcgcttcg
cgcaatccggtattcgccccggagctggtgcaatggttgcaggatgcactgctggtagcc
aatctcgagctgggctgcagccaggtcggacaagccgcgttgatcctggcgttgctgcgc
aacccgcttcgctatgcagggagtgcttaccaggcgctgctcacccgactgaacgtcgat
cggttgaaagatttcgccttgtcgcaacagacccacccggtagccgatcactccgccaag
ccggacgactccctgctggcgcgcttcacccatgacctgacccggcaggctcgtgaaggt
caactcgacccggtgctttgtcgcgacggtgaagtcaggcagatgatcgatatcctcgtt
cgtcgccgcaaaaataacccaatcgtggtcggtgaagcaggggtgggcaagaccgccatc
gtcgaggggctggcgttgcgcatcgccgccgcagaagtaccgtcagtgctcgaaggcgtc
gagctgctttcgctggatatggggctcctgcaggccggcgccagcataaaaggtgaattc
gaacgtcgtctcaaaggggtgatcgacgaggtcaaggcttcgccaaaatccatcatcctg
ttcatcgatgaggctcacaccttgattggcgcgggtggcaacgccgggggcgccgatgcg
gccaacctgctcaagccggccttggcccggggtgagctgcgtactatcgcggccaccacc
tgggccgagtacaaaaaatattttgagaaagacccggccctggcccgtcgtttccaaccg
gtgcaattgcacgagccgaccgtcagtgaagcagtgaccatcctgcgcggcctggcccgg
gtctacgagaacagtcacggcatttacctgcgggatgatgcggtggtcgcggcggcgcaa
ttgtcggcccgctacctggctggtcgtcagttgccagacaaggctgtggatgtgttggac
actgcctgcgcccgcgtgcgcatcagcctggccgctgcgccgcatagcctggagcgattg
cgcggcgagttggctgaaggcgagcgccagcgccaggcgctacgtcgtgatgcgcaggcc
ggcctatcaattgatcttcaggcgctggaagcgctggaggtacgcctggaggccatcgaa
gacgagcgccgaacgctggagatccactggaccgagcaacgcattcttgcggagcgcctg
ttggcgcttcgccagcaattggccaaggtacgggacggtgcggtggatcaacccctcagc
gtcgaagccttggaagcggcgttgcatgaaacacacggcacgttggtggctgcgcaagtc
caagagcgcctggtcagcttcgaagtttgcccgcgactggtagccgaagtcatcagtgcc
tggaccggtgtgccgctggcacaactggcgcgggagcacagtttgaaagtcgccagtttc
gcgacggacctgcgtgctcgtattcgtggtcaggagccggctgtgcgggcgcttgatcgc
gcgatgcgtgccgccgccgcaggcctgaacaaacccgacgctccggtgggcgtgtttctg
ttggtagggcccagtggcgtcggcaagaccgagacggcgcatgccctggccgacctgctc
tacggcggtgatcgttttatcaccacgctcaacatggccgaattccaggagaaacatacg
gtttcccggctgattggcgcgccgccgggctacgtcggttttggcgaaggcggcatgctc
accgaagccgtgcggcaaaagccctattcagtggtgctgctcgatgaggtcgaaaaaacc
gacccggatgtgttgaatctgttctaccagatcttcgacaagggcttggccaacgacgga
gaagggcgggagattgattttcgcaacaccctgatcctgatgacgtcgaacctgggcagc
gaacgcatcaacgagttgtgcgaaaacggtacaaaaccaagtgccgaatgccttgaagag
tccattcgcccaatactcagtcaacatttcaaacccgcgctgttggcgcgcatgtgcgtg
gtgccgtactacccgctcaacgggccggtgttacgtgaactggtggaagtcaaactcgac
cacctgggcgagcggctgcaccgtcgtcaattgggtttcagttattgcgggcaccttgtg
aaccacctggtcgagcgttgcagtcgtaatgatcgtggcgcacgactgattgaccaactg
cttgacctgcacctgatgccgctggttgccgaccggttgctcgccgccatggccggtggc
gaacagctacggcacgtacacgccgtgctcaacggcgacgccagtctcgcgtgtgagttc
tcctga
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