Paracoccus ferrooxidans: E3U26_00990
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Entry
E3U26_00990 CDS
T09619
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfeo
Paracoccus ferrooxidans
Pathway
pfeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3U26_00990 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfeo03400
]
E3U26_00990 (mfd)
Enzymes [BR:
pfeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3U26_00990 (mfd)
DNA repair and recombination proteins [BR:
pfeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E3U26_00990 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
MFD_D3
AAA_30
Cas3-like_C_2
AAA_16
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WGR59396
LinkDB
All DBs
Position
197040..200504
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AA seq
1154 aa
AA seq
DB search
MAPLPEHLTLSGAPEGMDAALVARELARGNPVIHIARDDRRMAAMRAALGFFAPSAAVLE
FPAWDTTPYDRVSPAGAVMAARMAVLTALAHGALKGPFVVLTTLSAAMQRVPAREVLRDA
GFSAAVGDRMDEGALRAFLARMGFSQAPTVTEPGDFAVRGGIIDIFPPGESGPIRLDMFG
DVLDGARRFDAETQRSIEKLDRVELAPMSEVILDEAAITRFRQNYRAEYGGGANDPLYEG
ISAGRKMAGMEHWLPWFHARLESLFDYLPGASVVADDHLEQVRDARWHTITEQFAARREA
LARKGGTDTVYRPVPPSGMFPDEAEWARWLAAHRVLRLSVLPQPPGPGVLDAGGRVGRNF
APERQAEKGNLFKALADHIRNLQASRRVVIASFSEGARERLAGLIADEGIKGAQPIADLR
ELPDQPGALGLAVWPLEEGFTSDGAATGALAVISEQDVLGVRLIRGAKRRRKAENFLRDT
TTLSPGDLVVHVEHGIGRYTGLETVQALGVPHDCVALEYAGGDRLYLPVENIELLSRYGH
EEGLLDKLGGGAWQARKARLKERIKLIADRLMRVAAERLLRPAPVLEPEHHEIESFAARF
PYAETEDQAAAIADVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAP
TTLLARQHFRTFAERFRGTAINVRPLSRFVSAKDAAETRKGLAEGTVDIVVGTHAVLAKQ
VRFKTLGLLIVDEEQHFGVGHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG
TPPVDRLAIRTYVSEFDGVTIREALLREKYRGGQSFFVVPRLADLPEVEEWLREHVPEAS
TIVAHGQLAAGDLDQRMNAFYDRGADVLLATSIVESGLDIPTANTMVVWRADMFGLAQLY
QIRGRVGRSKTRAYCYLTTKPRVPLTPQAMRRLKFLGAIDSLGAGFNLASQDLDLRGAGN
LLGEEQSGHIKEVGFELYQQMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESYVP
DLDVRLGLYRRLAELTSKVELEGFAAELIDRFGPLPREVNTLLLVIRIKAMAKRANIARL
DAGPKGATIQFHGDKFPNPAGLVEFIHDQRGQAKVTDNCIVVLRDWPTDAERIKGSFAIA
KELAAKIKEGMAKG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcttcccgaacacctgaccctgtccggcgcacccgagggcatggacgccgcg
ctggtcgcgcgcgaactggcccgcggcaatcccgtcatccacatcgcccgcgacgaccgg
cgcatggccgcgatgcgggcggcgctgggcttctttgcgccctcggccgcggtgctggag
tttccggcctgggacaccacgccctatgaccgcgtctcgcccgcgggggcggtgatggcc
gcgcgcatggcggtgctgacggcgctggcccatggcgcgctgaaggggccgttcgtggtg
ctgaccacgctttcggccgccatgcagcgcgtgcccgcgcgcgaggtgctgcgcgatgcc
ggcttctcggccgcggtgggcgaccgtatggacgaaggcgccttgcgcgccttcctggcc
cgcatgggattctcgcaggccccgaccgtgaccgagccgggcgatttcgccgtccgcggc
ggcatcatcgacatcttcccgcccggcgaatccgggccgatccggctggacatgttcggc
gacgtcctggacggcgcgcgcagattcgatgcagaaacacagcgttccatcgaaaagctc
gaccgcgtcgagcttgcgcccatgtccgaggtgatcctggacgaagccgccatcacccgc
tttcgccagaactaccgcgccgaatatggcggcggcgccaacgatccgctttacgagggc
atcagcgccggccgcaagatggcgggcatggagcattggctgccctggttccatgcgcgg
ctggaaagcctgttcgactatctgcccggcgcctcggtggtggcggacgaccatctggag
caggtgcgcgacgcgcgctggcacacgatcaccgagcagttcgcggcgcggcgcgaggcg
ctggcccgcaagggcggcaccgacacggtctatcgccccgtgccgccctccggcatgttc
ccggacgaggccgaatgggcgcgctggctggccgcgcatcgggtgctgcgcctttcggtt
ctgccgcagccgccgggtccgggcgtgctggatgccggcggtcgcgtcgggcgcaatttc
gcccccgagcgccaggccgagaagggaaatcttttcaaggcgcttgccgatcatattcga
aaccttcaagcctcgcgccgggtggtcatcgccagtttctcggaaggggcgcgcgaacgc
ctggccgggctgatcgccgatgagggcatcaagggcgcccagcccatcgccgacctgcgc
gagctgcccgaccagcccggtgcgcttggcctggcggtctggccgctggaggagggcttc
acctcggacggcgcggccaccggggcgctggcggtgatctcggaacaggacgtgctgggc
gtccggctgatccggggcgccaagcgccgccgcaaggccgagaatttcctgcgcgacacc
actacgctaagccccggcgacctggtcgtgcatgtcgaacacggcatcggccgctatacc
gggctggagaccgtccaggcgcttggcgtgccgcatgattgcgtggcgctggaatatgcc
ggcggcgaccggctttacctgccggtcgagaatatcgagttgctcagccgctacgggcac
gaggaggggctgctcgacaagctgggcggcggcgcctggcaggcgcggaaagcgcgcctc
aaggaacgcatcaagctgatcgccgaccggctgatgcgcgtcgcggccgaacgcctgctg
cggcccgccccggtgctggagcccgagcatcacgagatcgaaagcttcgccgcccgcttc
ccctatgccgagaccgaggaccaggccgccgccatcgccgacgtggccgaggatctggcc
gccggccggcccatggaccggctggtcgtgggcgacgtgggcttcggcaagaccgaggtc
gccatgcgcgcggccttcatcgccgcctcgcagggccggcaggtcgccgtggtggcgccg
accacgctgctggcgcgccagcacttccgcacctttgccgagcgcttccgcggcacggcg
atcaacgtccggccgctgtcgcgcttcgtgtccgccaaggatgccgccgagacccgcaag
ggcctggccgagggcacggtggacatcgtcgtcggcacccatgccgtgctggcgaaacag
gtgcgcttcaagaccctgggcctgctgatcgtcgacgaggagcagcatttcggcgtcggg
cacaaggagcggctgaaggagctgcgcagcgacatccacgtcctgaccctgaccgcgacg
ccgatcccgcgcaccttgcagctgtcgctgaccggggtgcgggatctgtcgatcatcggc
acgccgccggtggaccgcctggcgatccgcacctatgtgtccgagttcgacggcgtgacc
atccgcgaggcgctgctgcgcgagaaatatcgcggcgggcagagcttcttcgtcgtgccg
cggctggccgacctgcccgaggtcgaggaatggctgcgcgagcatgtgccggaggccagc
accatcgtcgcccatggccagctggcggcgggcgacctggaccagcggatgaatgccttc
tacgaccgcggcgccgatgtgctgctggcgaccagcatcgtcgaatcggggctggatatc
ccgaccgcgaacaccatggtggtctggcgcgccgacatgttcggcctggcgcagctttac
cagatccgcggccgggtcgggcgctccaagacgcgggcctattgctacctgaccaccaag
ccgcgggtgcccttgaccccgcaggcgatgcggcggctgaaattcctgggcgccatcgac
agcctgggcgccggcttcaacctggcctcgcaggacctggacctgcgcggtgccggcaac
cttctgggcgaggagcagtcgggccatatcaaggaggtcggcttcgagctttaccagcag
atgctggaggagaccatcgccaagctgaaatccggcgagatcgagggcacgcccgaggac
gaatgggcgccgcagctgaacctgggcgtgccggtgacgatcccggaaagctatgtgccc
gacctggacgtgcggctggggctttatcgccgcctggccgagctgaccagcaaggtcgag
ctggagggtttcgcggccgagctgatcgaccgtttcggccccttgccgcgcgaggtgaac
acgcttttgctggtcatccgcatcaaggccatggccaagcgggcgaatatcgcccggctg
gatgccgggcccaagggcgcgaccatccagttccatggcgacaagttcccgaacccggct
gggctggtcgagttcatccacgaccagcgcggccaggccaaggtgacggataactgcatc
gtcgtcctgcgcgactggccgaccgacgccgagcgcatcaagggcagctttgccatcgcc
aaggagctggcggcgaagatcaaggaaggcatggccaaggggtag
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