Paracoccus ferrooxidans: E3U26_02025
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Entry
E3U26_02025 CDS
T09619
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pfeo
Paracoccus ferrooxidans
Pathway
pfeo03030
DNA replication
pfeo03430
Mismatch repair
pfeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E3U26_02025 (dnaE)
03430 Mismatch repair
E3U26_02025 (dnaE)
03440 Homologous recombination
E3U26_02025 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfeo03032
]
E3U26_02025 (dnaE)
03400 DNA repair and recombination proteins [BR:
pfeo03400
]
E3U26_02025 (dnaE)
Enzymes [BR:
pfeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E3U26_02025 (dnaE)
DNA replication proteins [BR:
pfeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E3U26_02025 (dnaE)
DNA repair and recombination proteins [BR:
pfeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E3U26_02025 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
WGR59580
LinkDB
All DBs
Position
401491..404961
Genome browser
AA seq
1156 aa
AA seq
DB search
MPENSPRFIHLRTHSEHSLLEGAVPVKKLADLAAQNGMPAVALTDSNALFAALEFSVKAQ
DAGVQPIIGCQVTLAADVTGPVVLLAQNEAGWLNLMALSTCLYLRDDHALPHVTVEELEA
HAEGLICLTGAAGGPLGQLVLQGRQAEACALAERLAAAFPTRLYVELQRHHDAEGQPVPE
EAGSEGGMIDIAYALDLPLVATNDVYFPKPELFDAHDALICISERAYVDQTAPRRRLTPQ
HYFKSAAEMATLFADLPEAVQNTVEIARRCAFAVKKHKPILPRFADDEVEELRRQAWDGL
RARLAVIPHSASVEEYEERLRFELGIIEQMGFPGYFLIVADFIKWAKEHGIPVGPGRGSG
AGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIQYVQEKYGRD
KVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRLSKMIPVEGVKPVSVTKALADEPRLRE
AAREEVVGRLLDYAAKIEGLLRNASTHAAGVVIGDRPLHRLVPLYRDPASDMPATQFNMK
WVEQAGLVKFDFLGLKTLTVIQNAVDLINAGGRPLHVAADGRVLYEPAKGAENQINAIPL
DDKPSYDLFASARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMENIPTYCE
VKNGLRPLESIHPSIDHILAETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAE
EMAKERPKFVEGCKAQGIDAKKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANH
PVEFMAAVMNCDIHLTDKLAVYKREADRMGIETVAPCVNRSEAMFSVKEGKILYALGALK
GVGVEAMNLIVQARGDRPFADMQDFARRVDMRRVGKRPLEMLARAGAFDALEPNRARVLK
ALDGLVAWSAAVQEAAASSQSSLFGGGEDLPPPRPVAAPVWMPAEKLAEEHAAVGFYLSG
HPLDDYQPALRRKGVQTLAEVTQAAQDGALVAQLAGTVAHRQEKKSARGTRFAFVGLSDP
TGLYEVTVFSDTLDAHRQHLEPGENVVLQVQVEPSGDQVKLLARSVMPLEQAVADAGANR
LAVEIAGLDAVPAVAEALERILAELNVPPRARGPIALRLKDGADLVDIEIAEDVPLTTPA
RQALRVIPGVLEVLEE
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaattccccccgattcatccacctgcgcacccattccgaacattcgctgctg
gaaggcgcggtgccggtcaagaaacttgccgatctcgcggcgcaaaacggcatgcccgcc
gtggcgctgaccgacagcaacgccttgttcgcggcgctggaattttcggtcaaggcccag
gacgcgggggtgcagccgatcatcggctgccaggtcacgctggcggctgatgtcaccggc
ccggtggtgctgctggcgcagaacgaggccggctggctgaacctgatggcgctttcgacc
tgcctttacctgcgcgacgaccacgccttgccgcatgtgacggtcgaggaactggaagcc
catgccgaggggctgatctgcctgaccggcgccgccggcggcccgctgggccagctggtg
ctgcaaggccggcaggccgaggcgtgcgcgctggcggaaaggctcgccgccgccttcccg
acccggctttacgtcgaactgcagcgccatcacgacgccgagggccagccggtccccgaa
gaggcgggttccgaaggcggcatgatcgacatcgcctatgcgctggacctgccgctggtc
gcgaccaacgacgtctatttccccaagcccgagcttttcgacgcccatgacgcgctgatc
tgcatctccgaacgcgcctatgtcgaccagaccgcgccgcgccgccggctgacgccgcag
cattacttcaagtccgcggccgagatggcgaccctgttcgccgacctgcccgaggcggtg
cagaacaccgtcgagatcgcccgccgctgcgcctttgccgtcaagaagcacaagccgatc
ctgccgcgctttgcggatgacgaggtcgaggaactgcgccgccaggcctgggacggcttg
cgcgcccggctggcggtgatcccgcattccgcctcggtcgaggaatacgaggagcggttg
cgcttcgagctgggcatcatcgagcagatgggctttcccggctatttcctgatcgtggcc
gatttcatcaaatgggccaaggaacacggcatcccggtggggcccggccggggctcgggc
gcgggttcgctcgtcgcctatgctctgacgattaccgaccttgatccaatacgttacagc
ctgctcttcgagcggttcctgaacccggagcgggtgtcgatgcccgacttcgacatcgac
ttctgcatggatcgccgcgaggaggtgatccaatacgtgcaagagaaatacggccgcgac
aaggtcggccagatcatcaccttcggcgcgcttttgtccaaggcggcggtgcgcgacgtc
ggaagggtgctgcaactgcccttcggccaggtggaccggctttccaagatgatcccggtc
gaaggggtcaagccggtcagcgtcaccaaggcgctggccgacgagccgcgcctgcgcgag
gccgcgcgcgaggaggtggtcggccgcctgctggactatgctgccaagatcgaggggctg
ctcaggaacgcctcgacccatgccgccggcgtggtgatcggcgaccggccgctgcaccgg
ctggtgccgctttaccgcgacccggcctccgacatgccggccacgcagttcaacatgaaa
tgggtcgagcaggcggggctggtcaagttcgacttcctgggcctcaagacgctgacggtg
atccagaacgccgtggacctgatcaacgcgggcggccggccgctgcatgtcgcggccgac
ggtcgggtgctttacgagccggcgaaaggggccgagaaccagatcaacgccatcccgctg
gacgacaagcccagctacgacctgttcgccagcgcccgcacggtcgcggtgttccaggtc
gaaagctcgggcatgatggacgcgctgcggcgcatgaagcccacctgcatcgaggacatc
gtggcgctggtggcgctgtatcgccccggcccgatggagaacatcccgacctattgcgag
gtgaagaacggcctgcgaccccttgaatccattcatccttccatcgaccatatcctcgcc
gagacccagggcatcatcgtctaccaggaacaggtgatgcagatcgcgcaggtcatggcc
ggctattcgctgggcggcgccgacctgctgcgccgcgcgatgggcaagaagatcgccgaa
gagatggccaaggagcggcccaagttcgtcgaaggctgcaaggcgcagggaatcgacgcg
aagaaggccggagaggtctttgatctgcttgaaaaattcgccaactacggcttcaacaag
tcccatgccgcggcctatgccgtggtcagctaccagaccgcctggctgaaggcgaaccac
ccggtcgagttcatggccgcggtgatgaactgcgatattcacctgaccgacaagctcgcc
gtctacaagcgcgaggccgaccgcatggggatcgagacggtcgcgccctgcgtcaaccgc
tccgaagccatgttcagcgtcaaggagggcaagatcctctatgcccttggcgcgctgaag
ggcgtgggggtcgaggcgatgaacctgatcgtgcaggcccgcggcgaccggccctttgcc
gacatgcaggactttgcccgccgggtggacatgcgccgcgtcggcaagcggccgctggag
atgctggcccgcgccggcgccttcgacgcgctcgagccgaaccgcgcccgcgtgctgaag
gcgctggacgggctggtggcctggtcggcggcggtgcaggaggcggcggcctccagccag
tcctcgcttttcggcgggggcgaggatctgccgccgccgcgcccggtcgccgcgcccgtc
tggatgccggctgagaaactggccgaggaacatgcggccgtgggcttctacctgtccggt
catccgctggacgactaccagccggcgctgcgccgcaagggggtgcagacgctcgccgag
gtgacgcaggcggcgcaggacggcgcgctggtggcgcagctggccggcaccgtggcgcac
cggcaggaaaagaaatccgcccgcggcacccgtttcgcctttgtcggcctgtccgacccg
accgggctttacgaggtcacggtgttttccgacacgctggatgcgcatcgccagcacctg
gagccgggcgagaacgtggtcttgcaggtgcaggtcgagccttcgggcgaccaggtcaag
ctgctggcgcgctcggtcatgccgctggagcaggcggtggccgatgccggcgcgaaccgc
ctggcggtcgagatcgccgggctggacgccgtccccgccgtcgccgaggcgctggaacgc
atcctggccgagctgaacgtgccgccgcgcgcccgcggccccatcgcgctgcggctgaag
gacggggccgacctggtggatatcgagatcgccgaggacgtgccgctgaccacgcccgcc
cgccaggccctgcgcgtgatccccggcgtgctggaggtgctggaggaatag
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