Paracoccus ferrooxidans: E3U26_02420
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Entry
E3U26_02420 CDS
T09619
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pfeo
Paracoccus ferrooxidans
Pathway
pfeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3U26_02420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfeo03019
]
E3U26_02420
Enzymes [BR:
pfeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3U26_02420
Messenger RNA biogenesis [BR:
pfeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3U26_02420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
CMS1
P-loop_SecA
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
WGR59644
LinkDB
All DBs
Position
complement(473851..475293)
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AA seq
480 aa
AA seq
DB search
MRADTRATWPKDDMTNETTRPNRSGNPRAQQGGKPRFRSDKPNTNHRRHRAEPEEKFIRR
AIPEMDTAFTRMGIDPRVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAA
FGLPMLTRLLNIGRKPEPKTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASI
NVQTQRLERGVDVLIATPGRLIDLIERGAVDLSQTKYLVLDEADQMLDIGFIHALRRIAK
MLPRERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATL
LAEYLSKHVDELAIVFGRTKHGSEKLSKLLEKWGFKVAAIHGNKSQGQRERALASFRAGE
TKVLVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIG
ELRAIEKAMKAKIAVVGGEEPFEAAKIRERGGPAARPAQGAARKRPARRPSRAPKSTQRS
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccgatacgcgggcgacctggccgaaagacgacatgacgaacgaaaccacccgc
ccgaaccgttcgggcaacccccgcgcccagcaaggcggcaagccgcgcttccgcagcgac
aagcccaacaccaaccaccgccgtcaccgcgccgagccggaagagaagttcatccgccgc
gccatccccgagatggacaccgccttcacccgcatggggatcgacccgcgcgtggcgatc
aacctgccgggcctggggatcgagaccccctcccccatccaggagaaatccatccccggc
atcgtcgccggccgcgaccttctgggcctggcgcagaccggcaccggcaagacggcggcc
ttcggcctgccgatgctgacccggctgctgaacatcggccgcaagcccgagcccaagacc
tgccgcgcgctgatcctggcgccgacgcgggaactggcgacccagatcgccgagaatatc
gacaactatgccatcggcacgccgatccggcagttccgcgtcgtcggcggcgcctcgatc
aacgtgcagacccagcggctggaacgcggcgtcgacgtgctgatcgcgacgccgggccgg
ctgatcgacctgatcgagcgcggcgccgtggacctgtcgcagaccaagtatctggtgctg
gacgaggccgaccagatgctggacatcggcttcatccacgcgctgcgccgcatcgccaag
atgctgccgcgcgaacgccagacgctgctgttctcggccaccatgccgaagctgatggag
gagctggccgacagctacctgaacgatcccctgcgcgtggcggtgaacccgcccggacag
gcggcggaaaagatcgaccagggcgtgcatttcgtcaaccagggcgacaaggcgaccctg
ctggcggaatacctgtcgaaacatgtggacgagctggccatcgtcttcggccgcaccaag
cacggttcggaaaagctgtcgaagcttctggagaaatggggcttcaaggtcgccgcgatc
cacggcaacaagagccagggccagcgcgagcgggcattggcgagcttccgcgccggcgag
accaaggtgctggtcgcgaccgacgtggcggcgcgcgggctcgacattccgcaggtggcg
catgtctataactacgacctgccgaacgtgccggaaaactatgtccaccgcatcggccgc
accgcccgcgccgggcgcgacggccgcgccatcgccttctgctcgcccaccgagatcggc
gagctgcgcgccatcgaaaaggcgatgaaggccaagatcgccgtggtcggtggcgaggaa
ccctttgaggcggccaagatccgcgagcgcggcggcccggccgcccgcccggcccaaggc
gcggcgcgcaagcgccctgcccggcgcccctcgcgcgcgccgaaatcgacgcagcgcagc
tga
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