Paracoccus ferrooxidans: E3U26_05275
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Entry
E3U26_05275 CDS
T09619
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pfeo
Paracoccus ferrooxidans
Pathway
pfeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pfeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3U26_05275 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfeo03021
]
E3U26_05275 (rpoC)
03400 DNA repair and recombination proteins [BR:
pfeo03400
]
E3U26_05275 (rpoC)
Enzymes [BR:
pfeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3U26_05275 (rpoC)
Transcription machinery [BR:
pfeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3U26_05275 (rpoC)
DNA repair and recombination proteins [BR:
pfeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3U26_05275 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WGR60155
LinkDB
All DBs
Position
complement(1039798..1044006)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQELATNPLNPLAAPRQFDEIKISLASPEEILAWSYGEVKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLSYGQLLTEEEFLDAQDQYGADAFT
ANIGAEAIREMLANIDLAATAEQLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGNNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTMEREGMKGEGMVFANLEEVEHAL
ASGAVHLHARITARLPQIDENGNEVIKRFETTPGRIRLGALLPKNAKAPFELVNRLLRKK
DIQNVIDTVYRYCGQKESVIFCDQIMGLGFREAFRAGISFGKDDMVVPPTKWELVEETQD
QVKQFEQQYLDGLITQGEKYNKVVDAWSKCNDRVTDAMMKTISATKKDENGAELEPNSVY
MMAHSGARGSVSQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIREHDCGTERAITASAAVNDGEVVSPLSERVLGRV
AAEDVLVPGEDVVIVRKNELIDERKADEIEVAGVQNVRIRSALTCESDDGVCALCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFIAAAQEGTVAFENES
TLENANGELIVMSRNMQLHIKGATGDTLASHKLFYGSKLFVREGDAVARGQKMFEWDPYT
LPIIAEKAGIAKYVDLISGISVRDETDDATGMTQKIVTDWRSAPKGNELKPEIIIVDQDG
EPVRNEQGNPVTYPMSVEAILSVEEGQEIRAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAELDGYVRFGKDYKNKRRIAIQPADDTLEPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILRIMGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
ILDSGDTTLLKGEHVDRDEFEEENAKIEAKGGRPATGEPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVQGKRDKLVGLKENVIVGRLIPAGTGGATARVRRIATDRDHEVIEARRA
EAEAAAALIAPEDTPAEVGDDE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttgccaccaatcccctgaacccgctggctgcgccgcggcagttcgac
gaaatcaagatctcgctggcctcgcccgaggaaatcctcgcctggtcctatggcgaggtg
aagaagcccgagaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgc
gcgcgcatctttggcccgatcaaggattacgaatgcctctgcggcaaatacaagcgcatg
aagtatcgcggcctggtctgcgagaaatgcggcgtcgaggtgacgctgcaaaaggtccgg
cgcgagcgcatgggccatatcgagctggccgccccggtcgcgcatatctggtttctgaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgaccttgagcgtatc
ctctatttcgagaactacgtcgtcatcgagccgggcctgaccgacctgagctatggccag
ctgctgaccgaagaggaattcctcgacgcgcaggaccagtatggcgccgacgccttcacc
gccaatatcggcgccgaggcgatccgcgagatgctggccaacatcgacctggccgccacc
gccgaacagctgcgcgaggagctgaaggaagcgacgggcgagctgaagccgaagaagatc
atcaagcggctgaagatcgtcgaaagcttcctggaatcgggcaaccgtcccgaatggatg
gtgctgacggtgatcccggtcatcccgccggaactgcgcccgctggtgccgctcgacggc
ggccgctttgccacgtccgacctgaacgacctgtatcgccgggtcatcaaccgcaacaac
cgcctgaagcggctgatcgagctgcgtgcgcccgatatcatcgtgcgcaacgaaaagcgg
atgctgcaagagtcggtcgatgcgctgttcgacaacggccgccgcggccgcgtcatcacc
ggcaacaacaagcgcccgctgaaatcgctgtccgacatgctgaagggcaagcagggccgg
ttccgccagaaccttctggggaaacgggtcgacttctcgggccgttcggtcatcgtgacc
gggccggagttgaagctgcaccaatgcggcctgccgaagaagatggcgctggagctgttc
aagccgttcatctattcgcggcttgaggccaaggggctttccagcaccgtcaagcaggcc
aagaagctggtcgagaaagagcgtcccgaggtctgggatatcctggacgaggtgatccgc
gaacatccggtgctgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttc
gagccgatcctgatcgagggcaaggcgatccagttgcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtccacgtcccgctgtcgcttgaggcgcag
ctggaagcgcgcgtgctgatgatgtccacgaacaacgtgctgtcgcccgccaacggcgcg
ccgatcatcgtgccgtcgcaggacatggtccttggtctctactacacgaccatggagcgc
gagggcatgaagggcgagggcatggtctttgccaacctcgaggaagtggaacacgcgctg
gcctcgggcgcggtgcatctgcatgcccgcatcaccgcccgcctgccgcagatcgacgag
aacggcaacgaggtcatcaagcgcttcgaaaccacgcccggtcgcatccgcctgggcgcg
ctgctgcccaagaacgccaaggcgcccttcgagctggtcaaccgcctgctgcgcaagaag
gacatccagaacgtcatcgacaccgtctaccgctactgcggccagaaggaatcggtgatc
ttctgcgaccagatcatgggcctgggcttccgcgaggcgttccgcgccggcatttccttc
ggcaaggacgacatggtcgtgccgccgacgaaatgggagctggtcgaggagacgcaggac
caggtcaagcagttcgagcagcaatacctggacggcctgatcacccagggcgagaaatac
aacaaggtcgtcgatgcctggtcgaaatgcaacgaccgcgtcaccgacgccatgatgaag
accatctcggccaccaagaaggacgaaaacggcgccgagctggagccgaactcggtctac
atgatggcgcattcgggcgcgcggggctcggtcagccagatgaagcagctgggcggcatg
cgcggcctgatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttcttgaatacttcaactcgacccacggcgcgcgcaagggcctg
tcggacaccgcgttgaagacggcgaactcgggctacctgacccgccgcctggtggacgtg
gcgcaggactgcatcatccgcgagcatgattgcggcaccgagcgggcgatcaccgcctcg
gccgcggtcaacgacggcgaagtcgtcagcccgctttccgagcgcgttctgggccgcgtc
gcggccgaggacgtgctggttccgggcgaggacgtggtcatcgtgcgcaagaacgagctg
atcgacgagcgcaaggccgacgagatcgaggtggcgggcgtgcagaacgtgcgcatccgc
tcggccctgacctgcgagtcggacgacggggtctgcgcgctgtgctatggccgcgacctg
gcccgcggcacgctggtcaacatcggcgaggcggtcggcatcattgccgcccagtccatc
ggcgagccgggcacgcagctgacgatgcggaccttccacatcggcggcatcgcccagggc
ggccagcagtccttcatcgccgcggcgcaagagggcacggtggctttcgagaacgaaagc
acgctggaaaacgccaatggcgagctgatcgtgatgagccgcaacatgcagctgcacatc
aagggcgcgacgggcgacacgctggccagccacaagctgttctacggctcgaaactgttc
gtgcgcgaaggcgatgccgtggcgcgcggccagaagatgttcgaatgggacccctatacc
ctgccgatcatcgccgagaaggcgggcatcgcgaaatatgtcgacctcatcagcggcatt
tcggtccgcgacgagaccgacgacgcgacgggcatgacgcagaagatcgtgacggactgg
cgctcggcccccaagggcaacgagctgaagcccgagatcatcatcgtcgaccaggatggc
gagccggtgcgcaacgaacagggcaacccggtcacctatccgatgtcggtcgaggcgatc
ctgtcggtcgaggaaggccaggagatccgcgccggcgacgtggtggcgcgtatcccgcgc
gaaggcgccaagaccaaggacatcaccgggggtctgccccgcgtggcggaactgttcgag
gctcgtcgtcccaaggatcacgcgatcatcgccgaactggacggctatgtgcgcttcggc
aaggactacaagaacaagcgccgcatcgccatccagcccgccgacgacacgctggagccg
gtcgaatacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctgcgcatcatgggg
atcgaggctctggccgattacctgatcgacgaggtgcaggacgtctaccggctgcaaggc
gtgaagatcaacgacaagcacatcgaggtgatcgtccgccagatgctgcaaaagatcgag
atcctcgacagcggcgacaccacgctgctgaagggcgagcatgtcgaccgcgacgagttc
gaggaagagaacgccaagatcgaagccaagggcggccgtccggccaccggcgagccggtg
ctgctgggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggccgcctcgttc
caggagacgacccgcgtgctgaccgaggccgccgtccagggcaagcgcgacaagctggtc
gggctcaaggagaacgtgatcgtcggccggctgatcccggccggcaccggcggggccacg
gcccgcgtgcgccgcatcgccaccgatcgcgaccacgaggtgatcgaggcgcgccgcgcc
gaggcggaagccgccgccgcgctgatcgcgccggaagacaccccggccgaggtcggcgac
gacgagtga
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integrated database retrieval system
