Paracoccus ferrooxidans: E3U26_19955
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Entry
E3U26_19955 CDS
T09619
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pfeo
Paracoccus ferrooxidans
Brite
KEGG Orthology (KO) [BR:
pfeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pfeo03016
]
E3U26_19955 (rnd)
Enzymes [BR:
pfeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
E3U26_19955 (rnd)
Transfer RNA biogenesis [BR:
pfeo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E3U26_19955 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WGR62983
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All DBs
Position
pFER4:595866..597074
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AA seq
402 aa
AA seq
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MPAKATNDQKPEIRTLTTTAELAEFCALAKTQPYVTLDTEFLRERTYYSRLCLIQAALPP
ASAAKAAGGSAVLIDPLVEGLSLEPLYDLFRHKATVKVFHAARQDLEIFFHDAGVMPDPL
FDTQIAAMVCGFGEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLR
AIYEFLSTQLDKTGRAPWLAEEVAVLLNPETYITRPEEAWERVRTRSGSPRFLAVVRELA
RFRETYAQERDIPRARVFKDDALIELASTKPLSEADLAKSRLLLRDARRGEIANGILSAV
KAGVEAKDLPKPAPDEPGRPGNAALAELLRVLLKAKADAAGVAPRLIASASDLDAIASGM
RDLPALSGWRAEVFGRDALRLAAGEIALSAQGGAVKVVPVAP
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaaaagcaacgaacgatcaaaagcccgagatccgcaccctgaccaccacggcc
gaactggccgagttctgcgccctggccaagacccagccctatgtcacgctcgacaccgaa
ttcctgcgcgagcggacctattattcccggctttgcctgatccaggccgcgctgcccccg
gcctcggccgcgaaggcggcggggggctcggcggtgctgatcgacccgctggtcgagggg
ctgtcgctcgagccgctctacgaccttttccgccacaaggcgacggtcaaggtattccat
gccgcgcggcaggatctggagatcttcttccacgacgcgggcgtgatgcccgatccgttg
ttcgacacccagatcgccgccatggtctgcggctttggcgagcaggtcggctacgagacg
ctggtcaagaagatcgcgcgccagccgctggacaagtcgtcgcgctttaccgactggtcg
caccggccgctctcggatgcgcaggcggcctatgcgctggccgacgtgacgcatctgcgg
gcgatctacgagttcctctcgacccagctcgacaagaccgggcgcgcgccctggctggcc
gaagaggtcgcggtgcttctgaaccccgaaacctacatcacccgcccggaagaggcgtgg
gagcgggtgcgcacccgctccggctcgccccgcttcctggccgtggtgcgcgaactcgcg
cgtttccgcgagacctatgcgcaggaacgcgacattccgcgcgcccgcgtgttcaaggac
gacgcgctgatcgagctggcctcgaccaagccgctctccgaggccgacctggccaagtcg
cggctgcttctgcgcgacgcacgccgtggcgagatcgccaatggcatcctttcggccgtc
aaggccggggtcgaggccaaggatctgcccaagcccgcccccgacgagccgggccggccg
ggcaatgccgcgctggcggagctgctgcgggtgctgctgaaggccaaggccgatgcggcc
ggggtggcgccgcggctgatcgcctcggcctcggatctggacgccatcgcctcgggcatg
cgcgacctgccggcgctgtcgggctggcgcgccgaggtcttcggccgcgacgcgctgcgg
ctggcggccggcgagatcgcgctatcggcgcagggcggcgcggtcaaggttgtgccggtc
gcgccctag
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