Paludibaculum fermentans: IRI77_01810
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Entry
IRI77_01810 CDS
T06895
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pfer
Paludibaculum fermentans
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfer03032
]
IRI77_01810 (topA)
03400 DNA repair and recombination proteins [BR:
pfer03400
]
IRI77_01810 (topA)
Enzymes [BR:
pfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IRI77_01810 (topA)
DNA replication proteins [BR:
pfer03032
]
Prokaryotic type
DNA Topoisomerases
IRI77_01810 (topA)
DNA repair and recombination proteins [BR:
pfer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IRI77_01810 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_NUD
Toprim_4
Toprim_2
DUF1272
Motif
Other DBs
NCBI-ProteinID:
QOY88723
UniProt:
A0A7S7NS34
LinkDB
All DBs
Position
complement(460738..463188)
Genome browser
AA seq
816 aa
AA seq
DB search
MAKSLVIVESPAKAKTIGKYLGKGFTVKASLGHVKDLPKNDIAVDVDHDFRPSYVVIEGK
KKLIDELRKAAKESDAIYLAADPDREGEAICYHLQEELQPKKGEGPSVYRVTFNEITANA
VRKAFETPRAVDTNLVDAQQARRVLDRLVGYKISPLLWDKVRRGLSAGRVQTVALRMIVD
REREIRSFVKQEYWSVEVHLNAKKAPVLKANLAKRDGVNVEIADQTSADAIVTALEGAQY
VVRTVTTREKRRHAVPPFITSTLQQESARKLRFSVKRTMMLAQRLYEGVELGEEGSVGLI
TYMRTDSTRVSDDALKEVREMIGQRFGEQYLPESPNVYKTKKAAQDAHEAIRPTSAMRHP
DQVAPYLSEDELKVYRLVWMRFVASQMTPAVFDQTTIEVVAQGTDSSEYLMRATGSVPKF
DGFQAVYKEGKDQKDEEDDEESARLPQVSDGETLRFKAIHPEQHFTEPPPRFTEATLVKE
LESDGVGRPSTYASILSTIQEREYVKREGGKFIPTELGVVVTELLVESFADIFDVNYTAR
MEDDLDQIEEGKLDWHVAMADFYNRFLKDLEEAERSMRDIKRMELPTDQICEKCGKPMVI
KWGKHGSFLACTGYPECTNTRQLNKGIHELDSPENGEEKVEISEQDATEYCPNCGREMVL
KKGRFGTFLACTGYPDCKTTKQLGQAQKQPDVILDEKCPLCDHNLVTKSGRFGEFTACSN
YPTCKYVKQKTIGVMCPQCGTGEISERRSKRGKTFYGCTRYPDCDFVAWARPIPEKCPEC
GSPYLVDKVLKSGHFAQCPNKECKYKREVAETPVPA
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatctctcgtgatcgtcgaatcgcccgcgaaggcgaagacgatcggcaagtat
ctgggtaagggcttcacggtcaaggccagtctcggccacgtgaaagacttgcccaagaat
gacatcgcggtggacgtcgaccacgacttccgtccttcttatgtagtgatcgagggcaag
aagaagctcatcgacgaactgcgcaaggcggccaaggaatccgacgccatctatctcgca
gctgaccctgaccgggaaggcgaagctatctgctatcacctgcaggaagagctccagccc
aagaagggtgaagggccaagcgtataccgcgtcacctttaacgaaatcacggccaatgcg
gtgcgcaaggcgtttgagacgccgcgtgccgtagacaccaacctggtagatgcccagcag
gcgcggcgcgtactggaccgcctggtgggctacaagatctccccgctgctgtgggacaag
gtccggcgcggactatcggccggacgggtacagaccgtcgcgctccgcatgattgtggac
cgcgagcgtgagattcgctccttcgtcaagcaggagtactggtcggtcgaagttcacctg
aacgcgaaaaaggcacccgtgctcaaggccaacctggccaagcgcgacggggtgaacgtc
gaaattgcggaccagacctcagcggatgcgattgtgacggcgctggaaggcgcgcagtat
gtcgtccgcacggtgacgacgcgcgaaaagcggcgtcatgcggtgccgccgttcatcacg
tccaccctgcagcaggaatcggcccgcaagctgcgcttcagcgtgaagcgcacgatgatg
ctggcgcagcggctgtatgaaggcgtcgagctcggcgaagagggttcggtcggtctgatc
acctacatgcgtaccgattcgacgcgcgtcagcgacgacgcgttgaaagaggtgcgggag
atgatcgggcagcgcttcggcgagcagtacctgccggagtcgcccaacgtctacaagacg
aagaaggcggcgcaggacgcgcacgaagcgattcgtccgacgtcagccatgcggcatccg
gaccaggtggcgccctacttgtcggaagacgagctgaaagtttacagactggtttggatg
cgcttcgtggcgtcgcagatgacgccggcggtgttcgaccagacaactatcgaagtggtg
gcgcagggcacggacagctccgagtacctgatgcgggcgacgggcagcgtgccgaagttc
gatggcttccaggctgtctataaggaaggcaaggaccagaaggacgaggaagacgacgaa
gagagcgcccggctgccgcaggtaagcgacggcgagacgctgcgcttcaaggcgatccat
cccgagcagcactttaccgagccgccgccccgtttcacggaagcgacgctggtgaaggag
ctggaatcggatggcgtgggccggccgtcgacctacgcttcgattctgtcgacgatccag
gaacgcgagtacgtcaagcgcgagggcggcaagttcatccccaccgagttaggggtggtg
gtgacggagctgctggtggagagcttcgccgacatcttcgacgtgaactacacggcgcgg
atggaggacgacctggaccagatcgaggaaggcaaactcgactggcacgtcgcgatggcg
gatttctacaaccgcttcctgaaggacctggaagaggccgagcggtcgatgcgcgacatc
aagcgcatggagctgccgaccgaccagatctgcgagaagtgcggcaagccgatggtgatc
aagtggggcaagcacggcagcttcctggcctgcaccggctaccccgaatgcaccaatacg
cggcagctgaacaagggcatccacgagctggacagcccggagaacggcgaggagaaggtc
gagatctccgagcaggacgcgacggagtactgcccgaactgcgggcgcgaaatggtcctc
aaaaagggccgcttcggaacgttcctggcctgcaccggctatccggactgcaagacgacc
aagcaactgggccaggcccaaaagcagccggacgtgatcctggacgagaagtgcccgctg
tgcgatcacaacctggtgacgaagagcggccgtttcggcgagttcacggcctgttcgaac
tacccgacgtgcaagtacgtcaagcagaagaccatcggggtgatgtgcccgcagtgcggc
acgggcgagatcagcgagcggcgcagcaaacgcggcaagacgttctacgggtgcacacgg
tatccggattgcgactttgtcgcctgggcgcggccgatcccagagaagtgccccgagtgc
ggatcgccgtacctggtggacaaggttctgaaatcaggccatttcgcgcagtgccccaac
aaggagtgcaagtacaagcgcgaggtggcggagaccccagtcccggcgtga
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