Paludibaculum fermentans: IRI77_04610
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Entry
IRI77_04610 CDS
T06895
Name
(GenBank) PD40 domain-containing protein
KO
K01730
oligogalacturonide lyase [EC:
4.2.2.6
]
Organism
pfer
Paludibaculum fermentans
Pathway
pfer00040
Pentose and glucuronate interconversions
pfer01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
IRI77_04610
Enzymes [BR:
pfer01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.6 oligogalacturonide lyase
IRI77_04610
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Gene cluster
GFIT
Motif
Pfam:
PD40
Pectate_lyase22
Motif
Other DBs
NCBI-ProteinID:
QOY89242
UniProt:
A0A7S7SKJ7
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All DBs
Position
1158897..1159949
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AA seq
350 aa
AA seq
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MQQSRRSFLAGVAVASQEWVRYQDPATEFDVRRLTSPEHESALAPLPSRCVDRRSRTLLF
SAISGEKWAPFVIELSNGQIKPLAVAEDYAPETLTFSPDDRSALFFAGAKLVSIQLTNQH
RLELAEIRDGWKRSGPVAATEDGQSLFFVETQGGNSNIRRLRQPKGSPETAVEVRGTAQN
VTPNPKRATLLWLNEAGELWVAGFDGAGQRRVETPAGRVLQAMWSPDGQSLQYLLEPAES
NQLNAIREQVLDARTDTLIAKTSQFVAFSRNANSSVFVGASRSKASPNILLLLRATRREF
TLCEHKAKDPGLAEPFFSANSQRIFFQSDRHGKMAIYMMNVEKLIEKTDS
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagtcgcggcgatcctttctggccggcgtggccgtcgcttcgcaggaatgggtg
cgctatcaggatccggcgactgagttcgatgtccgccgcctgaccagtccggagcatgag
agcgcccttgcgcccctgccgtcgcgctgtgtcgaccggcgcagccgcacgctgctgttt
tcggccatctccggggagaagtgggctccgtttgtcatcgagttgtcgaacggccagatc
aagccgctggccgtggccgaggactacgcgccagagaccctgacgttctcgccggacgat
cggtcagccttgttcttcgctggagccaagctggtttcgatccaactcaccaaccagcac
cggttggaactggctgaaatccgggacggttggaagcgctccggtccggttgccgccact
gaagacggtcaatcgctgttttttgtggagacgcagggcggaaactccaacatccgccgc
ctgcggcagcccaaagggagccccgagaccgcggtggaggtgcgaggcaccgcccagaat
gtgacgcccaatccgaaacgggctacgctgctgtggctgaatgaggcgggcgagttgtgg
gtagcgggctttgacggggcggggcagcggcgggtggagactccggccgggcgcgtgctg
caggcgatgtggtcgcccgacgggcagtcgctgcagtacctgctggagccagccgaatcg
aaccaactgaatgccatccgcgaacaggtcctggacgcccgcacggacacgctgattgcc
aagaccagccagtttgtggctttctcgcgcaatgccaattccagcgtctttgtgggcgcc
agccgcagcaaggcatctcccaatattttgttgctgttgagggcgacaaggcgagagttt
actttatgtgagcacaaggccaaggacccgggcctcgcggagcccttcttcagcgccaac
agccagcggatcttctttcagagcgaccgtcacgggaagatggcgatctacatgatgaac
gtcgaaaagctgattgagaagaccgattcctag
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