Paludibaculum fermentans: IRI77_08320
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Entry
IRI77_08320 CDS
T06895
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
pfer
Paludibaculum fermentans
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfer03019
]
IRI77_08320
03009 Ribosome biogenesis [BR:
pfer03009
]
IRI77_08320
Messenger RNA biogenesis [BR:
pfer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IRI77_08320
Ribosome biogenesis [BR:
pfer03009
]
Prokaryotic type
rRNA processing factors
IRI77_08320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QOY89947
UniProt:
A0A7S7SL75
LinkDB
All DBs
Position
2092225..2094852
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AA seq
875 aa
AA seq
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MSSKELVISQNRHESKVAILEDGQLVEVFFQRANEYSLAGSIHKGRVTRVLPGMQSAFVD
LGLDRDCFLYVSDFFEENADEIDKVGDERRGGREREREGDRDRDRDRDRGGRGRDRDRNR
SREQHAPAPVEAAPVIEEFEPAEVVEAVAAAPEAVAEAPAAEGDAAADKNNQDRRGRRSR
RRRRGGRGFPDSKYATAGEPGNEPVDEVEPEIPEPVAAEIEHEAEPAQAAPIEEVVLLPG
ESLAKYRRAPRPEPAPVPVVAEAAPVQEATPEPEPEPEPEPEIIHEPIDLDELQAAAEEA
ADQAAEQILDRVEEIEHRAEVAEEAVSQEAETVEEAEEEEDDEPAASDSEETEIEAVDDH
EDAIAACETEAIEPAEGEAAEVVEGEVSTEEPQNQSATVREQSGRAPHRISRRMRRRGRG
GRGQEAPGTEAPLEAAPEAPVERVVERPVERFEARQQQQAPPERRDRERERERPPIPSIA
DLLREGQEIIVQIAKEPLGQKGARITSHIAMPGRYVVYMPTVEHLGVSRKISTDEERQRL
KRILQKHREGVAGGFIMRTAGEGRSEEEIAADMQFLAALWLDIKQKAEKRRAPALLHHDV
EVVQRLIRDQLTDGFKAIWVDNEDLYEQVLHSVERLAPALLPRVKMYTRPEPIFDAFGIT
QELEKALRPKVWLKSGGYIVINQTEALVAIDVNTGKYVGKSNRLEDTIVKTNLEAVKEIV
RQMRLRDLGGIIVVDFIDMDERKNRAKVMQALEEVMRMDKAPYKILQFNDFGLVAITRKR
VKQSLERALCSACPTCEGAGYVKSVDTVISEILTQAQKYAKVVDTKDVVLRVNPEVAKEM
KSVSNQYLEELEEILGRPVLVSADPLLHQEKFDLA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaaagagctggtgatcagccagaaccgccacgagagcaaggtggcgattctc
gaagacggccagttggttgaagttttcttccaacgcgccaacgaatattccctggccggc
agtatccacaaaggcagggtaacccgcgttcttcccggcatgcagtcggcttttgtcgac
ctgggcctggaccgcgactgtttcctctacgtctcggacttctttgaagagaatgccgac
gagatcgacaaggttggcgacgagcgccgaggcggccgggaacgggagcgcgaaggcgac
cgtgaccgcgatcgggaccgtgatcgaggcggccgaggccgcgatcgggaccggaaccgc
agccgcgaacagcatgcccccgccccggtggaagccgcgcctgtcattgaagagtttgaa
cccgccgaggtagtggaagccgtagccgccgctccggaagccgtggccgaggcgcctgcc
gccgaaggcgacgccgccgctgataagaacaatcaggaccgtcggggccgccgctcgcgc
cgccgccgccgtggtggacggggtttcccggattccaagtacgccaccgctggtgaacca
ggcaacgagccggtcgacgaagtcgagccggagattccagaaccggtcgcggctgagatc
gaacacgaagcggaaccggcgcaagccgctcccattgaggaagtcgtcctgctgccgggt
gagtcgctcgccaagtaccgtcgggcccctcgtcccgaaccggcccccgtgccggtggtg
gccgaagcggcgcccgtgcaggaagctacacccgaacccgagccggaaccggaacccgag
cccgaaatcatccatgagccgatcgacctggacgagttgcaggccgcggccgaagaagcg
gccgaccaggcagccgaacagatccttgaccgggtggaagagattgagcaccgcgccgaa
gtagccgaagaagcggtcagccaggaagcggaaacggtcgaggaagcggaagaagaagag
gacgacgaacccgccgcctccgattccgaagagactgagatcgaagcggtggacgatcac
gaagacgcgatcgccgcctgcgaaacggaagctatcgagccggccgaaggcgaagcagcg
gaagtggtggaaggcgaagtctccacagaagaaccgcagaatcagagtgcaacggtccgc
gaacagagcggccgggctccgcaccgcatttcgcgccgcatgcgccgccgtggccgtggc
ggccgtggccaggaagcgccgggtacggaagcgccgctggaagccgcgccggaagccccg
gtggagcgagttgtcgagcgtccggtggagcggtttgaagcccgccagcagcagcaggcg
ccgccggaacggcgcgatcgtgaacgcgagcgcgagcgtccgcccatcccatcgattgcc
gaccttctacgcgaaggtcaggaaatcatcgtccagattgccaaggaaccgttgggccag
aagggtgcgcgcatcacttcgcacatcgccatgcccggccggtatgtcgtgtatatgccg
acggttgaacatcttggcgtttcgcgcaagatttccaccgacgaagagcggcagcggctg
aagcgcatcctgcagaagcatcgcgagggtgtggccggcggtttcatcatgcgtacggct
ggtgaaggccgcagcgaggaagagatcgcggccgacatgcagttcctggccgccctgtgg
ctggacatcaagcagaaggctgaaaagcggcgcgctccggccctgctccaccatgacgtg
gaagtggtgcagcggctcatccgcgaccagctcaccgacgggttcaaggccatctgggtc
gacaacgaagatctgtacgaacaggtgctgcattccgtcgaacggctggctccggccctg
ctcccgcgggtcaagatgtacacccggcccgagccgatcttcgacgccttcggcatcacg
caggagctggaaaaggccctgcggcctaaggtttggctgaagtcgggcggctacatcgtc
atcaaccagaccgaggcgctggtcgccatcgacgtcaacaccggcaagtatgtcggcaag
tcgaaccggctggaagacaccatcgtcaagacgaacctcgaagcggtgaaggaaatcgtc
cgccagatgcggctgcgcgatctgggcggcatcatcgtggtcgacttcatcgacatggac
gagcgcaagaaccgagcgaaggtcatgcaggcgctggaagaggtcatgcggatggataag
gctccttacaagatccttcaattcaatgacttcggcctggtcgccatcactcgcaagcgc
gtcaagcagtcgctggaacgggcgctctgctcggcctgccccacctgcgagggcgcgggc
tatgtgaagagtgtcgatacggtgatcagcgagatcctcacccaggcgcagaagtacgcc
aaggttgtggataccaaggacgtcgtgctgcgggtgaaccccgaagtcgcgaaggagatg
aagtcggtctccaaccagtatctggaagagctggaagagattctgggccgtccggtgctg
gtgagcgccgatccgttattgcaccaggagaagttcgacctggcgtaa
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