Paludibaculum fermentans: IRI77_11085
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Entry
IRI77_11085 CDS
T06895
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pfer
Paludibaculum fermentans
Pathway
pfer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IRI77_11085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfer03400
]
IRI77_11085 (mfd)
Enzymes [BR:
pfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IRI77_11085 (mfd)
DNA repair and recombination proteins [BR:
pfer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IRI77_11085 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOY91970
UniProt:
A0A7S7NY62
LinkDB
All DBs
Position
complement(2830810..2834223)
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AA seq
1137 aa
AA seq
DB search
MVRRLAHEPTTRSMLGGLTPTAKALYLTLLWENLEQPILVVTDTNRTAEILHELLETFHG
LLLAGRGARPPVHIPALDVLPGQGLSPHTEIKAQRAVGLFRLASGKCSIAVTPVASALLR
TEGAAAYRQLALALRQEDEIAMDDLASHLDSIGYEKREPVEMEGEYSIRGGIFDVFPAEA
HRPIRIEFFGDTVESLRRFDPETQRSVLKVEEVTLLPMEETPRTRDFLRRLAELMQADDV
VPGETFPGWEFAAPLLRPRNDSIENLIEKPILVWDEPEALKVAAERLWKRLEGLAEQSPC
PPDQVFRHWGEFQAQHPDRREIELRNLSLEGDTHAGDAPLEIRSQPGMAFRNNMPAAVSE
ARTLVDKGYRVAFFAAAQGEVERLADILGEYSLPFQLGMELTGSTPQYLADRAYMAMQTA
SVYLIQGQVRRGVTLPEAQFALIGSEDLFEASDYAAQPARARSHVALFTPESLDLKIGDY
VVHAQHGIGRFTGLRQISGGDTMEDFMVVEYAAESKLYVPLTRLDLIQKYRGANEGKPSL
DKLGGVTWAKTKSRVKAKMRDMAEELLKLYAERKMSEGYAFSADSNWQREFEDAFEYSAT
RDQLQAVTEIKRDMESPHPMDRLLCGDVGFGKTEVAMRAAFKALGDGKQVAVLAPTTVLA
LQHFETFQKRFQAFPVRIEMLSRFRSPKETKAVLADLKAGKVDVVVGTHRILSKDLEFPD
LGLLVVDEEQRFGVAHKERLKQMKKSVDVLTMSATPIPRTLHMSLLGLRDMSVIETPPKD
RLAVQTVVAKYNPDLIKTAIEQEVQRGGQVYFVHNRVDSIWTRAATIQELVPGARVTVGH
GQMGETELEKVLLSFMHRGADVFVCTTIVENGLDIPLANTIIIENAQNYGLSELYQLRGR
VGRSNRRAYAYLMVPTDVDLTEVARKRLAALKEFSDLGAGFKIAALDLELRGAGNLLGGE
QHGHLAVVGYETYVKLLDETARELRGETVAPEVHSSLNLGLDIRIPTDYIADEQQRLKAY
KRIADAGDPAKAVALLQELEDRYGAAPESVRHLVEFSQLKTMAARCGIEAIDRRGGGVNI
KFHPGSAVDPHALMRLVSETAGAQFTPAGILRVPLDPAAAPGVLLVQLRAQIEGLAG
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
ctggtgcggcgcctggcgcacgagccgacgacgcgctcgatgctgggcgggcttacgccc
actgccaaagccctgtacctgaccctgctgtgggaaaacctggagcagccgatcctggtg
gtgacggacacgaaccggactgccgagattctgcacgagctgctggaaacgttccatggg
ctgctgctggccgggcgaggggctcggccgccggttcacatcccggcgttggatgtgctg
ccggggcagggcctgtctccccacaccgagatcaaagctcagcgcgccgtgggtttgttc
cgtctggcgtcggggaagtgctcgattgccgtcacgcccgtcgcgtcggcgctgctgcgg
accgaaggggccgcggcctaccggcaactggccctggcgctgcgccaggaagacgagatc
gcgatggacgacctggcgtcgcatctcgattccatcggctatgagaaacgggaaccggtg
gagatggagggtgagtactccatccgcggcggcatcttcgatgtctttccggcggaagcg
caccggccgatccgcattgagttctttggggacacggtggagagcctgcgccggttcgat
ccggagacgcagcgcagtgtcctgaaggtggaagaggtgacgctgctgccgatggaggag
actccgcggacgcgcgacttcctgcggcggctggccgaactaatgcaggccgacgatgtg
gtgccgggggagacgtttccggggtgggagttcgcggctccgctgttgcggccgcgcaac
gattccatcgaaaacctgattgagaagccgattctcgtctgggacgagccggaggcgttg
aaggtggcggcggagcggttgtggaagcggctggaagggttggctgagcagtcgccgtgc
ccgcccgaccaggtattccggcattggggtgagtttcaggcgcagcatccggaccggcgt
gagattgagttgcggaacctgtcgctggaaggcgatacgcacgcgggcgatgctccgctg
gagatccggtcgcagccgggcatggcgttccggaacaacatgccggcggcggtgagtgaa
gcacgcaccctcgtggacaagggctaccgggtggcgttcttcgcggcggcgcagggcgaa
gtggagcggctggccgatatcctgggcgagtattcgctgcccttccaattgggcatggaa
ctgaccgggtcgacgccgcagtacctggccgatcgcgcctacatggcgatgcagacggcg
agcgtctacctgatccaggggcaggtgcggcgcggtgtcaccttgccggaggcgcagttt
gcgctgatcggcagtgaagatctgttcgaggcgtcggactatgcggcgcagcctgcccgg
gcgcggtcgcatgtggcgctgtttacacccgaatcgctggatctgaagatcggcgactat
gtggtgcacgcgcagcacggcattgggcggtttacggggctgcggcagatttcgggcggc
gacaccatggaagatttcatggtggtggagtatgcggcggaatcgaagctgtatgttccg
ctgacgcggctggacctgatccagaagtaccgcggcgcgaacgaaggcaagccgtcgctg
gacaagctgggcggcgtcacctgggcgaagacgaagtcgcgggtgaaggcgaagatgcgc
gatatggcggaggagctgttgaagctctacgccgagcgcaagatgagcgaggggtacgcg
ttttcggcggattcaaattggcagcgcgagtttgaagatgcctttgagtactcagccacg
cgcgaccagttgcaggcggtgacggagatcaagcgggacatggagagcccgcatccgatg
gaccggctgctgtgcggcgatgtgggtttcggcaagaccgaagtggcgatgcgggcggcg
ttcaaggcgctgggcgatggcaagcaggtggccgtgctggctccgacgacggtgctggcg
ctgcagcatttcgagaccttccagaagcggttccaggcattcccggtgcggattgagatg
ctgagccggttccggtcgccgaaagagacgaaggcggtgctggcggatctgaaagccggc
aaggtggacgtggtggtgggcacgcaccggatcctgtcgaaggacctggagttcccggac
ctgggcctgctggtggtggacgaagagcagcgcttcggcgtcgcgcacaaagagcggctg
aagcagatgaagaagagtgtggatgtgctgacaatgtcggccacgccgattcctcgcacg
ttgcacatgtcgctgttgggcctgcgggacatgagtgtgatcgagactccgcccaaggac
cggctggcagtccagacggtggtggcgaagtacaatccggacctgatcaagaccgcgatt
gagcaggaagtgcaacgcggcggccaagtgtatttcgtacacaatcgcgtggattcgatc
tggacgagggcggcgacgattcaggagcttgtgccgggcgcgcgggtgacggtgggtcac
gggcagatgggcgaaaccgagctcgagaaggtcctgctgagcttcatgcatcgcggggcg
gatgtctttgtctgtacgacgattgtggagaacggcctggacattccgctggcgaacacg
attatcatcgagaacgcgcagaactacgggttgtcggagttgtaccagttgcgcgggcgt
gtgggccgcagcaaccggcgggcgtatgcgtacctgatggtgccgaccgatgtggatttg
accgaggtggcgcggaagcgcctggcggcgctgaaggagttctcggatctgggcgccggt
ttcaagattgcggctctggatctggaactgcgcggggccgggaacctgctgggcggtgag
cagcacgggcatctggcggtggtcgggtatgagacgtacgtgaagctgctggatgaaacg
gcgcgggagctgaggggcgaaacggtggctcctgaggtgcactcgtcgttgaatcttggt
ttggatatccggattccaactgattacatcgccgatgaacagcagcggttgaaggcgtac
aagcggattgcggatgcgggcgatccggcgaaggcggtggcgctgctgcaggagctggaa
gaccggtatggcgcggcgccggagagcgtgcggcacctggtggagttctctcagttgaag
acgatggcggcgcggtgtgggatcgaggcgatcgaccggcgcggcggcggcgtgaacatc
aagttccatccgggatcggccgtggatccgcatgcgctgatgcggctggtgagtgagacg
gcgggggcgcagtttactccggcggggattttgcgagtgccattggatcccgcggcggcg
ccgggggtgctgctggtgcagttgcgggcgcagattgaggggttggcggggtag
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